Non-Coding RNA Search

Ss1.1-rpbfe0121_h2.5.5

Sequence:


               
               GCTAATTTGTGACCAAAGAGAGCATCCTTCCCTCCGGATGCTGTATCCACTACTTTGTTG
TGTCTGTGCTAACCTGGGAACTGGCCACCTCCATTGTTCTTCTTGGCTTCTGCACAAGCT
CCATGAAAATCCATTGCACAGAAGAACTTCACCTGCAGACCTCTTCCAAATGACGATACC
TAGGACTCCTTCAAAGAGAGATCTGTGTACAATGTATATAGCTAAAATGCTCAGACGAAC
AACATATTAAAATTAAAACCACTGCCTATCATAACTACACTGGGCATCACAGAATAAGAG
GCCTCTAGAAATTGCTGCACAATGGTTCAATAAGATATTGCTAACACAATCGAACGGTAA
TACAGTCCTACTGCAAAAGAAGCACTTCAGACCTACCATGTCCTTAGAACTTCCAGAGTA
GCCCTGGCTCCTAGTTAAAGATGGGTTAATAGCCTTGAAGAACTGTCCTAACTAAGCACT
TATTGCTGGTGCTGGCCAGCCGTGATTTATGACTCTCCAACCGCCACGGGGGTCGGGGTC
GGGGGGAGGAAGGGAACGGAGGCCACAGGATGAAACAGTGAGGTCTTCTGTTGCCAGCAG
CTGCATCCTGTGGCTGTCGAGCATCTTCAGGTCCTTTAGATTTTGGACACGTTGGCAGGG
TATTTTAAAAAGCTATAACTACTGTAGTTTTCCAGTTCTCATTGCTGCTTTAGCCAACCA
CGCTGTCTTATTGGTGGTACTTTCTTCTGGCCACTGCACTGTAGATAATTCATTGAAAAC
AAGATTTGCCCATTACACAAATGATTAAACTCCTTCACCTTGTTGGAGTGGTTTCGTCTT
TTTTTTCCCCCCCCCTCCAGGTTTATATCTTCTCTAACACTTGCATGTAGCATTTAAGAA
TCAAAATCACAGTCCAACCCCCTCTTCTAATCACATTGGTGGTTTTCATTCTTTTTTACC
CTCAGCAAGCACTTTTCACTTTTCGGCTAGGTCTGTTTTTTAGCCTGCAGACGAGATTGA
GAAATCCTGATGAATTTGGTTTGGGTTAAAATTTTTGGTTTATTTACTTGAAATCCAAAC
TCCCTTGGAAACTCTGAAGTGCATTTGTGCACTTTCCTTTTTGTTTGTTTCAAAGAAGGG
ACTTTAATTATCTGAGTGATTTCCATGTCCTATTCATTATTCCTCTAGTGGTTGAAGCTG
TGTAGCATTTGAACACATATATATATAGTCACAAATATATTCATATAAACAGTATACATT
TTGAATCAGTTATTTGTTGAAGAAAAGTATATTCGATGAAGATGAAATTTAAAAATTTTA
AAAACCAGAGTCTATCCTCCAGGGATTGAACATTTTCCAACTCTATCTGGTCTTTTCCTG
TTGTGCAAAAATGACTCATCGTTCCGAATGTCAAAAACAAATACGACAAACAATGGCACT
TCATCATTTCAAGGAATGTTGCCAAGAGAGAAAATTTCCTGGGAGGGAGATTTCCCACAA
GCCAAATCTCCTAAGCCTCAAATGCTTGCACTTTTTGGCAGTTGGATAGGAAATAAAACA
TTCTTTGGCAGCCAAAATGAAGGAGGCTGATGGTGAAACTTTTTGGATACACCATGGCCT
TCTGGTCCAAACCTTCAACTGGAGCTCCAGAAAAGCATTTCTGTTGTGTTATTTGCAGTG
CAGATGATGTCTATGTAACAACATAATGGTTATTCACCTTTTTTTTTTCTTTTGATTTTT
GCTGTGTAATCAAAAACTTGAATACTGTGAGAAGAAGTGAATTTTCAGTTGATGAATCAG
CATCTTGTTCCCATGGTGATAACACTAATTGAATATATCTATGAGGGCATGTATTAGTTA
ACGGAAAAAAAAATACAACACTAACAATACATAGCTGCAATGTGTACAATGGCTGATTTA
ATTAAATAAAATGTACAAGTGTTCAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTAATTTGTGACCAAAGAGAGCATCCTTCCCTCCGGATGCTGTATCCACTACTTTGTTG
TGTCTGTGCTAACCTGGGAACTGGCCACCTCCATTGTTCTTCTTGGCTTCTGCACAAGCT
CCATGAAAATCCATTGCACAGAAGAACTTCACCTGCAGACCTCTTCCAAATGACGATACC
TAGGACTCCTTCAAAGAGAGATCTGTGTACAATGTATATAGCTAAAATGCTCAGACGAAC
AACATATTAAAATTAAAACCACTGCCTATCATAACTACACTGGGCATCACAGAATAAGAG
GCCTCTAGAAATTGCTGCACAATGGTTCAATAAGATATTGCTAACACAATCGAACGGTAA
TACAGTCCTACTGCAAAAGAAGCACTTCAGACCTACCATGTCCTTAGAACTTCCAGAGTA
GCCCTGGCTCCTAGTTAAAGATGGGTTAATAGCCTTGAAGAACTGTCCTAACTAAGCACT
TATTGCTGGTGCTGGCCAGCCGTGATTTATGACTCTCCAACCGCCACGGGGGTCGGGGTC
GGGGGGAGGAAGGGAACGGAGGCCACAGGATGAAACAGTGAGGTCTTCTGTTGCCAGCAG
CTGCATCCTGTGGCTGTCGAGCATCTTCAGGTCCTTTAGATTTTGGACACGTTGGCAGGG
TATTTTAAAAAGCTATAACTACTGTAGTTTTCCAGTTCTCATTGCTGCTTTAGCCAACCA
CGCTGTCTTATTGGTGGTACTTTCTTCTGGCCACTGCACTGTAGATAATTCATTGAAAAC
AAGATTTGCCCATTACACAAATGATTAAACTCCTTCACCTTGTTGGAGTGGTTTCGTCTT
TTTTTTCCCCCCCCCTCCAGGTTTATATCTTCTCTAACACTTGCATGTAGCATTTAAGAA
TCAAAATCACAGTCCAACCCCCTCTTCTAATCACATTGGTGGTTTTCATTCTTTTTTACC
CTCAGCAAGCACTTTTCACTTTTCGGCTAGGTCTGTTTTTTAGCCTGCAGACGAGATTGA
GAAATCCTGATGAATTTGGTTTGGGTTAAAATTTTTGGTTTATTTACTTGAAATCCAAAC
TCCCTTGGAAACTCTGAAGTGCATTTGTGCACTTTCCTTTTTGTTTGTTTCAAAGAAGGG
ACTTTAATTATCTGAGTGATTTCCATGTCCTATTCATTATTCCTCTAGTGGTTGAAGCTG
TGTAGCATTTGAACACATATATATATAGTCACAAATATATTCATATAAACAGTATACATT
TTGAATCAGTTATTTGTTGAAGAAAAGTATATTCGATGAAGATGAAATTTAAAAATTTTA
AAAACCAGAGTCTATCCTCCAGGGATTGAACATTTTCCAACTCTATCTGGTCTTTTCCTG
TTGTGCAAAAATGACTCATCGTTCCGAATGTCAAAAACAAATACGACAAACAATGGCACT
TCATCATTTCAAGGAATGTTGCCAAGAGAGAAAATTTCCTGGGAGGGAGATTTCCCACAA
GCCAAATCTCCTAAGCCTCAAATGCTTGCACTTTTTGGCAGTTGGATAGGAAATAAAACA
TTCTTTGGCAGCCAAAATGAAGGAGGCTGATGGTGAAACTTTTTGGATACACCATGGCCT
TCTGGTCCAAACCTTCAACTGGAGCTCCAGAAAAGCATTTCTGTTGTGTTATTTGCAGTG
CAGATGATGTCTATGTAACAACATAATGGTTATTCACCTTTTTTTTTTCTTTTGATTTTT
GCTGTGTAATCAAAAACTTGAATACTGTGAGAAGAAGTGAATTTTCAGTTGATGAATCAG
CATCTTGTTCCCATGGTGATAACACTAATTGAATATATCTATGAGGGCATGTATTAGTTA
ACGGAAAAAAAAATACAACACTAACAATACATAGCTGCAATGTGTACAATGGCTGATTTA
ATTAAATAAAATGTACAAGTGTTCAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1794-1953, gnl|bosTau2|chr4 (33850025-33849869)
               

               
               1794-1953, gnl|Hg17|chr4 (114662341-114662481)
               

               
               1794-1953, gnl|Mm7|chr3 (126759591-126759449)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1794-1953, gnl|bosTau2|chr4 (33850025-33849869)
               

               
               1794-1953, gnl|Hg17|chr4 (114662341-114662481)
               

               
               1794-1953, gnl|Mm7|chr3 (126759591-126759449)

Expressed library(ies): 26 entry(ies)

More info

Expressed library(ies): 26 entry(ies)

Help | Less info


               
               spc (0.680195)
               

               
               isp (0.601504)
               

               
               fcc (0.593354)
               

               
               cbe (0.478469)
               

               
               ret (0.3862)
               

               
               sug (0.381874)
               

               
               bfe (0.299715)
               

               
               hyp (0.285673)
               

               
               ebs (0.236602)
               

               
               mas (0.210305)
               

               
               aor (0.195274)
               

               
               ldo (0.194005)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               fhi (0.169578)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               csk (0.140746)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               ese (0.126502)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

Expressed library(ies): 26 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spc (0.680195)
               

               
               isp (0.601504)
               

               
               fcc (0.593354)
               

               
               cbe (0.478469)
               

               
               ret (0.3862)
               

               
               sug (0.381874)
               

               
               bfe (0.299715)
               

               
               hyp (0.285673)
               

               
               ebs (0.236602)
               

               
               mas (0.210305)
               

               
               aor (0.195274)
               

               
               ldo (0.194005)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               fhi (0.169578)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               csk (0.140746)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               ese (0.126502)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

	1794-1953, gnl\|bosTau2\|chr4 (33850025-33849869)
	1794-1953, gnl\|Hg17\|chr4 (114662341-114662481)
	1794-1953, gnl\|Mm7\|chr3 (126759591-126759449)

	spc (0.680195)
	isp (0.601504)
	fcc (0.593354)
	cbe (0.478469)
	ret (0.3862)
	sug (0.381874)
	bfe (0.299715)
	hyp (0.285673)
	ebs (0.236602)
	mas (0.210305)
	aor (0.195274)
	ldo (0.194005)
	gul (0.177588)
	sin (0.174948)
	fhi (0.169578)
	fco (0.157208)
	tbr (0.154178)
	fat (0.147427)
	ski (0.146735)
	csk (0.140746)
	ssp (0.13552)
	ste (0.135208)
	ese (0.126502)
	pgl (0.118483)
	jca (0.11396)
	cty (0.10408)