Non-Coding RNA Search

Ss1.1-rpbfe0121_n2.5

Sequence:


               
               CTCCTCTTCAGGCATGTTCTAAACTTCCTACGAAATGGAGAACTTCTACTGCCCGAAGGC
TTTCGAGAAAATCAACTGCTTGCACAAGAAGCAGAATTCTTTCAGCTCAAGGGACTGGCA
GAGGAGGTGAAGTCCAGGTGGGAAAAAGAACAGCTGACACCCAGGGAGACTACTTTCTTG
GAAATAACAGATAACCACGATCGCTCACAAGGACTGAGGATCTTCTGTAATGCTCCTGAT
TTCATATCAAAAATAAAATCTCGTATTGTTCTGGTATCCAAAAGCAGGCTGGATGGATTT
CCAGAGGAGTTTTCAATATCGTCAAATATCATCCAGTTTAAATACTTCATAAAGTCCGAA
AATGGCACTCGGCTTGTCCTGAAGGAAGACAACACCTTTGTCTGCACCTTGGAAACTCTG
AAGTTTGAGGCCATAATGATGGCCTTAAAGTGTGGTTTCAGACTGCTGACCAGCCTGGAT
TGTTCCAAAGGGTCAATTGTTCACAGCGATGCACTTCATTTTATCAAGTAATTACCTGTG
TCATGAACAAAGGCAACAAGCATGCAGCCAGCAAGCTTCGGAAAACCACAGCATCAGAGG
CATCCCAAATAACGTGCCCAGCTAGCTCTGTACTCAGAGCCCTGCTGCTAATCAATTACT
GTGAGCTAACGGTATGTAAATCCTATTGCTAAAGATGTCCTTCTCTAGGGTGTTCTGCAG
ATCAGACTCGTACACTTAAAGTGAAAACAGTGATCCTCTACATAGTGTAAATAAAGACTG
AACGCTTTTGCTATTTGTTTATTTTTCCTTAAGCTGTCGTTCAATCAGAATGTCTTGGGT
ACTTGCACAATGAACAAGCATCATGTACGTTATCTATCGTGCTTTTAAATAAATGGTAAC
AAAATATTTTTAAGGGACTATAAGATTTAAATCCCTTCTATTTATGGCAAAAATCTATGA
AGAAACTGCACTGGCAAAATTAACCATTGAGAGCAAGATAGATGTGCAGATCTACTAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCCTCTTCAGGCATGTTCTAAACTTCCTACGAAATGGAGAACTTCTACTGCCCGAAGGC
TTTCGAGAAAATCAACTGCTTGCACAAGAAGCAGAATTCTTTCAGCTCAAGGGACTGGCA
GAGGAGGTGAAGTCCAGGTGGGAAAAAGAACAGCTGACACCCAGGGAGACTACTTTCTTG
GAAATAACAGATAACCACGATCGCTCACAAGGACTGAGGATCTTCTGTAATGCTCCTGAT
TTCATATCAAAAATAAAATCTCGTATTGTTCTGGTATCCAAAAGCAGGCTGGATGGATTT
CCAGAGGAGTTTTCAATATCGTCAAATATCATCCAGTTTAAATACTTCATAAAGTCCGAA
AATGGCACTCGGCTTGTCCTGAAGGAAGACAACACCTTTGTCTGCACCTTGGAAACTCTG
AAGTTTGAGGCCATAATGATGGCCTTAAAGTGTGGTTTCAGACTGCTGACCAGCCTGGAT
TGTTCCAAAGGGTCAATTGTTCACAGCGATGCACTTCATTTTATCAAGTAATTACCTGTG
TCATGAACAAAGGCAACAAGCATGCAGCCAGCAAGCTTCGGAAAACCACAGCATCAGAGG
CATCCCAAATAACGTGCCCAGCTAGCTCTGTACTCAGAGCCCTGCTGCTAATCAATTACT
GTGAGCTAACGGTATGTAAATCCTATTGCTAAAGATGTCCTTCTCTAGGGTGTTCTGCAG
ATCAGACTCGTACACTTAAAGTGAAAACAGTGATCCTCTACATAGTGTAAATAAAGACTG
AACGCTTTTGCTATTTGTTTATTTTTCCTTAAGCTGTCGTTCAATCAGAATGTCTTGGGT
ACTTGCACAATGAACAAGCATCATGTACGTTATCTATCGTGCTTTTAAATAAATGGTAAC
AAAATATTTTTAAGGGACTATAAGATTTAAATCCCTTCTATTTATGGCAAAAATCTATGA
AGAAACTGCACTGGCAAAATTAACCATTGAGAGCAAGATAGATGTGCAGATCTACTAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55640197|ref|XP_522751.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55640197|ref|XP_522751.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               1-159, - strand, RNAz p=0.796931
               

               
               360-519, - strand, RNAz p=0.887396
               

               
               560-678, - strand, RNAz p=0.56516

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-159, - strand, RNAz p=0.796931
               

               
               360-519, - strand, RNAz p=0.887396
               

               
               560-678, - strand, RNAz p=0.56516

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1020, gnl|bosTau2|chr12 (5834682-5835696)
               

               
               1-1020, gnl|Hg17|chr13 (44666453-44665434)
               

               
               1-1020, gnl|Mm7|chr14 (70643190-70644167)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1020, gnl|bosTau2|chr12 (5834682-5835696)
               

               
               1-1020, gnl|Hg17|chr13 (44666453-44665434)
               

               
               1-1020, gnl|Mm7|chr14 (70643190-70644167)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               fco (0.157208)
               

               
               bfe (0.149858)
               

               
               bla (0.124347)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.157208)
               

               
               bfe (0.149858)
               

               
               bla (0.124347)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

	1-159, - strand, RNAz p=0.796931
	360-519, - strand, RNAz p=0.887396
	560-678, - strand, RNAz p=0.56516

	1-1020, gnl\|bosTau2\|chr12 (5834682-5835696)
	1-1020, gnl\|Hg17\|chr13 (44666453-44665434)
	1-1020, gnl\|Mm7\|chr14 (70643190-70644167)

	fco (0.157208)
	bfe (0.149858)
	bla (0.124347)
	ebs (0.118301)
	ecc (0.115035)