Non-Coding RNA Search

Ss1.1-rpbfe0122_o12.5

Sequence:


               
               AAAACATTCAGTCTTTCTGAGAATTTAAAAAGCCACCACTGGTTCCCAGTCAGCATATGC
AAGCTCTTAAAATACTGTTTATTATTAAACAATTCAGTGTACTATTTCATATTGGATAAT
AATGATCCTTAACATTGGCTTTTGAATCATCAGGAGTCAACATAAAAATTCCAACTTTCA
GTAATTTAGTGGAAAGTTTCTTTGTTTTGTTTTTTGGTTTTTTTCCAATTTTAAAGGCTT
AATCTTTACACTTGTATATTATGAGTGAAAGGGATCAACAGCTAACGTGGGGCAAGTAAT
AAAATAAATTTTGCTTTTGTCAGTTTTGACAATTCATGGTAGACATGATACATAGACTAC
AAAATAAAGTCTCTATTTAACCTGTCTATATAAGACACAGGGCCACACTAAACTACTCAG
AGGGATTTATCTATTCAGTTCACTAGAAACAATAAACAGTAATGTTCCAAGAAGAATATG
TGTCCTACCCTGTCTGATGTAGAGAAATAAATTATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAACATTCAGTCTTTCTGAGAATTTAAAAAGCCACCACTGGTTCCCAGTCAGCATATGC
AAGCTCTTAAAATACTGTTTATTATTAAACAATTCAGTGTACTATTTCATATTGGATAAT
AATGATCCTTAACATTGGCTTTTGAATCATCAGGAGTCAACATAAAAATTCCAACTTTCA
GTAATTTAGTGGAAAGTTTCTTTGTTTTGTTTTTTGGTTTTTTTCCAATTTTAAAGGCTT
AATCTTTACACTTGTATATTATGAGTGAAAGGGATCAACAGCTAACGTGGGGCAAGTAAT
AAAATAAATTTTGCTTTTGTCAGTTTTGACAATTCATGGTAGACATGATACATAGACTAC
AAAATAAAGTCTCTATTTAACCTGTCTATATAAGACACAGGGCCACACTAAACTACTCAG
AGGGATTTATCTATTCAGTTCACTAGAAACAATAAACAGTAATGTTCCAAGAAGAATATG
TGTCCTACCCTGTCTGATGTAGAGAAATAAATTATA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               395-512, - strand, RNAz p=0.724474

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               395-512, - strand, RNAz p=0.724474

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-516, gnl|bosTau2|chr6 (50058229-50057731)
               

               
               1-516, gnl|Hg17|chr4 (74306088-74305584)
               

               
               1-516, gnl|Mm7|chr5 (90199508-90199059)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-516, gnl|bosTau2|chr6 (50058229-50057731)
               

               
               1-516, gnl|Hg17|chr4 (74306088-74305584)
               

               
               1-516, gnl|Mm7|chr5 (90199508-90199059)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fbs (0.175346)
               

               
               bfe (0.149858)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.175346)
               

               
               bfe (0.149858)

	1-516, gnl\|bosTau2\|chr6 (50058229-50057731)
	1-516, gnl\|Hg17\|chr4 (74306088-74305584)
	1-516, gnl\|Mm7\|chr5 (90199508-90199059)