Non-Coding RNA Search

Ss1.1-rpbfe0124_h5.5

Sequence:


               
               AACGGTTTTTTTTATACTAAAAAGTGGAGGGAGATTTGTTTAAACAAGTATTTCTAAAAG
AAATATGTACATAGTCCTGGAAATTATTTGCGGTAAGGACCTACTCTTTACTCCAGTTGC
ATTTCTCAGACAATAAAGTGGTGCATCCATGCTACCTCCTACTTTGTCAACAAAGATGCT
GGTAACCCTTTACATTTTTGTACCATAATAGATTTTAAAAAAATCTAATGTTCTTTCTTG
CAAGACATCCTTTTGTTAACAGATTTGTTTCTTTTTAATGTTTTACCTAAAATTGGACAT
GCTTACAGGACACGTTTGCCTCTTACTTTATTTAACATTGTAGAAATGTAACTAATAATT
AAGCAGTGCTCACTACACAGTTTAGAATAGGCTTTCTCATTTATATTCTCTTCCAAATTC
GATCAGTTAGCAAAACTTCATACACCAATTTCTACATATGATGAGAATGTTTACAATTTA
AATTTTTAGAACTTGTTTTGGATGTGACTATATGTACAAAAATCGTGTTAACACTATGCT
CATGCTAGGAACCGACATAATGGAATTACTGAAATAAATGTGCTGTGAGGAATGGAAAAC
ATGGTGCAGATGTCTTGGTCATGAAAAATTGTGATTCTTCTTTTGAACGTTTTCCAAAAG
CAAATTCGTTCTTTTATTAATCGGAAATCAGATTCCTTTACAAATAACAGTTTTGTATGC
AAGCACCATTTCATTTTATTTCATGTAGTATGGCTAATAATATAGTTGAAACAAGGATAA
TGCATTGATACTTTTCTCGTATGTAAATAAAGTTAAAAGCAGTTAAAATAAGGAGTATTT
TGGTAGAGTATATACATACCTCACTGCCAGTGAAATTGCTTTCCTATGGTATATCTCCTT
ACCGGAAAAATCTCTAAATAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACGGTTTTTTTTATACTAAAAAGTGGAGGGAGATTTGTTTAAACAAGTATTTCTAAAAG
AAATATGTACATAGTCCTGGAAATTATTTGCGGTAAGGACCTACTCTTTACTCCAGTTGC
ATTTCTCAGACAATAAAGTGGTGCATCCATGCTACCTCCTACTTTGTCAACAAAGATGCT
GGTAACCCTTTACATTTTTGTACCATAATAGATTTTAAAAAAATCTAATGTTCTTTCTTG
CAAGACATCCTTTTGTTAACAGATTTGTTTCTTTTTAATGTTTTACCTAAAATTGGACAT
GCTTACAGGACACGTTTGCCTCTTACTTTATTTAACATTGTAGAAATGTAACTAATAATT
AAGCAGTGCTCACTACACAGTTTAGAATAGGCTTTCTCATTTATATTCTCTTCCAAATTC
GATCAGTTAGCAAAACTTCATACACCAATTTCTACATATGATGAGAATGTTTACAATTTA
AATTTTTAGAACTTGTTTTGGATGTGACTATATGTACAAAAATCGTGTTAACACTATGCT
CATGCTAGGAACCGACATAATGGAATTACTGAAATAAATGTGCTGTGAGGAATGGAAAAC
ATGGTGCAGATGTCTTGGTCATGAAAAATTGTGATTCTTCTTTTGAACGTTTTCCAAAAG
CAAATTCGTTCTTTTATTAATCGGAAATCAGATTCCTTTACAAATAACAGTTTTGTATGC
AAGCACCATTTCATTTTATTTCATGTAGTATGGCTAATAATATAGTTGAAACAAGGATAA
TGCATTGATACTTTTCTCGTATGTAAATAAAGTTAAAAGCAGTTAAAATAAGGAGTATTT
TGGTAGAGTATATACATACCTCACTGCCAGTGAAATTGCTTTCCTATGGTATATCTCCTT
ACCGGAAAAATCTCTAAATAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               811-924, - strand, RNAz p=0.535005

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               811-924, - strand, RNAz p=0.535005

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               6-924, gnl|bosTau2|chr3 (43381011-43381928)
               

               
               6-924, gnl|Hg17|chr1 (91093805-91092897)
               

               
               6-924, gnl|Mm7|chr5 (105794683-105793771)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-924, gnl|bosTau2|chr3 (43381011-43381928)
               

               
               6-924, gnl|Hg17|chr1 (91093805-91092897)
               

               
               6-924, gnl|Mm7|chr5 (105794683-105793771)

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

Help | Less info


               
               bfe (0.449573)
               

               
               lin (0.436808)
               

               
               rec (0.346141)
               

               
               ret (0.257467)
               

               
               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               fco (0.157208)
               

               
               ese (0.126502)
               

               
               clu (0.119646)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bfe (0.449573)
               

               
               lin (0.436808)
               

               
               rec (0.346141)
               

               
               ret (0.257467)
               

               
               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               fco (0.157208)
               

               
               ese (0.126502)
               

               
               clu (0.119646)

	6-924, gnl\|bosTau2\|chr3 (43381011-43381928)
	6-924, gnl\|Hg17\|chr1 (91093805-91092897)
	6-924, gnl\|Mm7\|chr5 (105794683-105793771)

	bfe (0.449573)
	lin (0.436808)
	rec (0.346141)
	ret (0.257467)
	fbs (0.175346)
	mcp (0.170648)
	fco (0.157208)
	ese (0.126502)
	clu (0.119646)