Ss1.1-rpbfe0124_n5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTTTAAACTTATCATGGTTTGAGCACTGACCCCCTTGTCTTCCTCTCTCTGGGTCCTAGT GATGATGAGAAAGGGCGCCAGATGTGGAGGAAATATCTAGAACGGGAAGACAGTCGGATC GGGGATCTCTTTGTTGGGCAGCTGAAGAGCTCCCTGACGTGTACGGATTGTGGTTACTGT TCTACAGTCTTTGACCCCTTCTGGGACCTCTCCCTGCCCATTGCTAAGCGAGGTTATCCC GAGGTGACTCTAATGGATTGCATGAGGCTCTTCACCAAAGAGGATGTGCTGGATGGCGAC GAGAAGCCAACGTGCTGTCGCTGCCGAGCCAGAAAACGCTGTATAAAGAAGTTCTCCGTC CAGAGGTTCCCAAAGATCTTGGTGCTCCATCTGAAGCGGTTCTCGGAATCCAGGATACGA ACCAGCAAGCTCACAACATTTGTGAATTTCCCACTAAGAGACCTGGACTTGCGAGAATTT GCCTCAGAAAACATCAACCATGCTGTTTACAACCTGTACGCTGTGTCCAATCACTCCGGA ACCACCATGGGCGGCCACTACACAGCCTACTGCCGGAGTCCCGTCACGGGCGAATGGCAC ACTTTCAATGACTCCAGCGTCTCCCCCATGTCCTCCAGCCAAGTGCGCACCAGCGACGCC TACTTGCTCTTCTACGAGTTGGCCAGTCCGCCCTCCCGCATGTAGCAGCCAGGAGCTACG TCCCGTCCGCCCTTCCCCGTGGTAGCCCCACACCCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTTTAAACTTATCATGGTTTGAGCACTGACCCCCTTGTCTTCCTCTCTCTGGGTCCTAGT GATGATGAGAAAGGGCGCCAGATGTGGAGGAAATATCTAGAACGGGAAGACAGTCGGATC GGGGATCTCTTTGTTGGGCAGCTGAAGAGCTCCCTGACGTGTACGGATTGTGGTTACTGT TCTACAGTCTTTGACCCCTTCTGGGACCTCTCCCTGCCCATTGCTAAGCGAGGTTATCCC GAGGTGACTCTAATGGATTGCATGAGGCTCTTCACCAAAGAGGATGTGCTGGATGGCGAC GAGAAGCCAACGTGCTGTCGCTGCCGAGCCAGAAAACGCTGTATAAAGAAGTTCTCCGTC CAGAGGTTCCCAAAGATCTTGGTGCTCCATCTGAAGCGGTTCTCGGAATCCAGGATACGA ACCAGCAAGCTCACAACATTTGTGAATTTCCCACTAAGAGACCTGGACTTGCGAGAATTT GCCTCAGAAAACATCAACCATGCTGTTTACAACCTGTACGCTGTGTCCAATCACTCCGGA ACCACCATGGGCGGCCACTACACAGCCTACTGCCGGAGTCCCGTCACGGGCGAATGGCAC ACTTTCAATGACTCCAGCGTCTCCCCCATGTCCTCCAGCCAAGTGCGCACCAGCGACGCC TACTTGCTCTTCTACGAGTTGGCCAGTCCGCCCTCCCGCATGTAGCAGCCAGGAGCTACG TCCCGTCCGCCCTTCCCCGTGGTAGCCCCACACCCT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 389-496, - strand, RNAz p=0.994142 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 389-496, - strand, RNAz p=0.994142 |
| Aligned organism(s): 42 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
| 1-124, gnl|bosTau2|chr15 (14443114-14442991) | |
| 1-124, gnl|canFam2|chr5 (17553972-17553877) | |
| 1-124, gnl|danRer3|chr15 (25235775-25235670) | |
| 1-124, gnl|dasNov1|scaffold_39894 (15947-16043) | |
| 1-124, gnl|echTel1|scaffold_306469 (8570-8474) | |
| 1-124, gnl|fr1|chrUn (102717664-102717576) | |
| 1-124, gnl|hg17|chr11 (118734683-118734778) | |
| 1-124, gnl|Hg17|chr11 (118734812-118734693) | |
| 1-124, gnl|loxAfr1|scaffold_51232 (5417-5319) | |
| 1-124, gnl|mm7|chr9 (44026257-44026161) | |
| 1-124, gnl|Mm7|chr9 (44026122-44026245) | |
| 1-124, gnl|monDom2|scaffold_2 (119118822-119118724) | |
| 1-124, gnl|oryCun1|scaffold_197393 (40825-40730) | |
| 1-124, gnl|panTro1|chr9 (120757509-120757604) | |
| 1-124, gnl|rheMac2|chr14 (117771504-117771599) | |
| 1-124, gnl|rn3|chr8 (47083016-47082920) | |
| 1-124, gnl|tetNig1|chr16 (8032329-8032409) | |
| 1-124, gnl|xenTro1|scaffold_75 (799887-799976) | |
| 205-308, gnl|bosTau2|chr15 (14442630-14442528) | |
| 205-308, gnl|canFam2|chr5 (17554461-17554370) | |
| 205-308, gnl|danRer3|chr15 (25236154-25236063) | |
| 205-308, gnl|dasNov1|scaffold_39894 (15043-15134) | |
| 205-308, gnl|fr1|chrUn (102718019-102717929) | |
| 205-308, gnl|galGal2|chr24 (4077593-4077502) | |
| 205-308, gnl|hg17|chr11 (118733896-118733987) | |
| 205-308, gnl|Hg17|chr11 (118734007-118733902) | |
| 205-308, gnl|loxAfr1|scaffold_51232 (5871-5780) | |
| 205-308, gnl|mm7|chr9 (44026708-44026617) | |
| 205-308, gnl|Mm7|chr9 (44026597-44026700) | |
| 205-308, gnl|monDom2|scaffold_2 (119119309-119119218) | |
| 205-308, gnl|oryCun1|scaffold_197393 (41254-41166) | |
| 205-308, gnl|panTro1|chr9 (120756724-120756815) | |
| 205-308, gnl|rheMac2|chr14 (117770715-117770806) | |
| 205-308, gnl|rn3|chr8 (47083454-47083363) | |
| 205-308, gnl|tetNig1|chr16 (8031846-8031934) | |
| 205-308, gnl|xenTro1|scaffold_75 (797384-797475) | |
| 389-496, gnl|bosTau2|chr15 (14442132-14442025) | |
| 389-496, gnl|Hg17|chr11 (118733510-118733403) | |
| 389-496, gnl|Mm7|chr9 (44027047-44027154) | |
| 615-756, gnl|bosTau2|chr15 (14441593-14441452) | |
| 615-756, gnl|Hg17|chr11 (118732845-118732706) | |
| 615-756, gnl|Mm7|chr9 (44028116-44028256) |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-124, gnl|bosTau2|chr15 (14443114-14442991) | |
| 1-124, gnl|canFam2|chr5 (17553972-17553877) | |
| 1-124, gnl|danRer3|chr15 (25235775-25235670) | |
| 1-124, gnl|dasNov1|scaffold_39894 (15947-16043) | |
| 1-124, gnl|echTel1|scaffold_306469 (8570-8474) | |
| 1-124, gnl|fr1|chrUn (102717664-102717576) | |
| 1-124, gnl|hg17|chr11 (118734683-118734778) | |
| 1-124, gnl|Hg17|chr11 (118734812-118734693) | |
| 1-124, gnl|loxAfr1|scaffold_51232 (5417-5319) | |
| 1-124, gnl|mm7|chr9 (44026257-44026161) | |
| 1-124, gnl|Mm7|chr9 (44026122-44026245) | |
| 1-124, gnl|monDom2|scaffold_2 (119118822-119118724) | |
| 1-124, gnl|oryCun1|scaffold_197393 (40825-40730) | |
| 1-124, gnl|panTro1|chr9 (120757509-120757604) | |
| 1-124, gnl|rheMac2|chr14 (117771504-117771599) | |
| 1-124, gnl|rn3|chr8 (47083016-47082920) | |
| 1-124, gnl|tetNig1|chr16 (8032329-8032409) | |
| 1-124, gnl|xenTro1|scaffold_75 (799887-799976) | |
| 205-308, gnl|bosTau2|chr15 (14442630-14442528) | |
| 205-308, gnl|canFam2|chr5 (17554461-17554370) | |
| 205-308, gnl|danRer3|chr15 (25236154-25236063) | |
| 205-308, gnl|dasNov1|scaffold_39894 (15043-15134) | |
| 205-308, gnl|fr1|chrUn (102718019-102717929) | |
| 205-308, gnl|galGal2|chr24 (4077593-4077502) | |
| 205-308, gnl|hg17|chr11 (118733896-118733987) | |
| 205-308, gnl|Hg17|chr11 (118734007-118733902) | |
| 205-308, gnl|loxAfr1|scaffold_51232 (5871-5780) | |
| 205-308, gnl|mm7|chr9 (44026708-44026617) | |
| 205-308, gnl|Mm7|chr9 (44026597-44026700) | |
| 205-308, gnl|monDom2|scaffold_2 (119119309-119119218) | |
| 205-308, gnl|oryCun1|scaffold_197393 (41254-41166) | |
| 205-308, gnl|panTro1|chr9 (120756724-120756815) | |
| 205-308, gnl|rheMac2|chr14 (117770715-117770806) | |
| 205-308, gnl|rn3|chr8 (47083454-47083363) | |
| 205-308, gnl|tetNig1|chr16 (8031846-8031934) | |
| 205-308, gnl|xenTro1|scaffold_75 (797384-797475) | |
| 389-496, gnl|bosTau2|chr15 (14442132-14442025) | |
| 389-496, gnl|Hg17|chr11 (118733510-118733403) | |
| 389-496, gnl|Mm7|chr9 (44027047-44027154) | |
| 615-756, gnl|bosTau2|chr15 (14441593-14441452) | |
| 615-756, gnl|Hg17|chr11 (118732845-118732706) | |
| 615-756, gnl|Mm7|chr9 (44028116-44028256) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.267344) | |
| bfe (0.149858) | |
| jej (0.0989218) |