Ss1.1-rpbfe0128_j16.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATGTATCGTTTCCGATCACAGCTCTTCACGGGGATTTCTGCTGCCGCCACCGCCCACTCT TACCCGCGCCGCTTCTCGCCTCTGTTGTTAGCCGAAGAATCGCCTCTCAGCCGCCCGCCG CACAGACGCACGAGTAAAAAGTGCAGCTCCATTGGCTGATCCTCGCTAAGCTCCGAGTTT AGGCGGCACCGGGCGTCCCACGATGCCGAAGAATAAGAAGCGGAACACACCCCACCGTGG TGGCAGTGGTGGCGGCGGCTCAGGGGCAGCCGCAACGACGGCGGCGACGGCAGGTGGCCA GCATCGAAACGTTCAACCTTTTAGTGATGAGGATGCATCGATTGAAACAATGAGCCATTG CAGTGGTTACAGCGATCCTTCCAGTTTTGCTGAAGATGGACCAGAGGTCCTGGATGAGGA AGGAACTCAAGAAGACTTAGAGTACAAGTTGAAGGGATTGATTGACCTAACCCTGGATAA GAGTGCGAAGACAAGGCAGGCAGCTCTTGAAGGTATTAAAAATGCACTGGCTTCAAGGAT GCTTTATGAGTTTATTCTGGAAAGAAGAATGACTTTAACTGATAGCATTGAACGCTGTCT GAAGAAAGGTAAAAGTGATGAGCAGCGTGCAGCTGCAGCCTTGGCGTCTGTTCTTTGTAT TCAGTTGGGTCCTGGAATTGAAAGTGAAGAGGTCTTAAAGACTCTCGGACCCGTCCTGAA GAAGATCATTTGTGATGGAACAGCTAGTATCCAGGCTAGGCAAACTTGTGCAACTTGCTT TGGTGTTTGCTGTTTTATTGCCACAGATGACATCACTGAGCTGTATTCAACTTTGCAGTG TTTGGAAAATATCTTCACCAAGTCTTATCTCAAAGAGAAGGACTCTAATGTAATTTGCAG CACCCCTAACACAGCCCTTCACATCAGCTCGCTTCTCGCGTGGACGTTGTTACTGACCAT ATGCCCACTCAGTGAAGTCAAGAAAAAGCTCGAGATGCATGTCCATAAACTTCCAAGCCT CCTCTCTTCTGATGATGTAAACATGAGAATCGCTGCGGGTGAATCTCTGGCGCTTCTGTT TGAATTGGCCAGAGGAATGGAGAGTGACTTTTTTTATGAAGACATGGAGTCTTTGACTCA GATGTTGAGGGCTTTGGCTACAGATGGAAATAAACACCGGGCCAAAGTCGATAAGAGGAA GCAGCGGTCGGTGTTCAGAGACATCCTGAGGGCGGTGGAGGAACGGGATTTTCCAACAGA AACTGTTAAATTTGGTCCTGAACGCATGTATATTGATTGCTGGGTGAAAAAACGTACTTA TGACACATTTAAGGAGATTCTTGGATCAGGGATGCAGTACCACTTGCAGTCAAATGAATT CCTTCGCAATGTGTTTGAACTTGGACCCCCAGTGATGCTTGATGCTGCAACACTTAAAAC AATGAAGATTTCTCGTTTCGAAAGGCATTTATACAATTCTGCAGCCTTCAAAGCTCGAAC AAAAGCTCGAAGCAAATGTCGAGATAAAAGAGCAGATGTTGGAGAATTCTTCTAGATTTT TAGCATTTGAAGACCTGTAAATACCCCCCTCCCCTTTTTGTAATTTCTAATGTATTTACT CTAGAGACAGTTTTTATCTTGGGCCAACAGCTTTTGTAGTAGGGGTTATATTTAATGTAT AGTATTGCAAATGGTGAGTTCTGATTATTGAATATTCTGTATATATAATCAGTAAACTTG AATGAAGTGTTTGTAATGTTTGGTCATTTTCTATTTATGAAGAGAGCAAAAATATGGTAT TTCACTTGATTTCATGACAAAAAACTATTAGCCAAGGTTAAACTTCTTATGGTGTGGTTG TCAGAAAAATTGATTAGAATGGTATAGATAACTTAAGATCTTAGCCAAATGAGTTCCAGA TATAATTTTGGGAGCTAGTTCTTCTGGAAAAGCTACTATTATTTTCTGTTTTAAATGGAA CCTAATAATTTTGTCACTGGGATCATCAAAGGGAATTATATCATGAGGCCTTTCAGTCCA TCTGTTGGGAGTTAGGATGAACTAGTATCTGCCAGAAAGGTTGCTGACCTTGACCTCTGA GGGCAATAACACTAACTTCACTTGCTGTGTAAGACCTTGTGCTCTTTTTTTTGAAATAAA GATCTTTTCACACCGAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATGTATCGTTTCCGATCACAGCTCTTCACGGGGATTTCTGCTGCCGCCACCGCCCACTCT TACCCGCGCCGCTTCTCGCCTCTGTTGTTAGCCGAAGAATCGCCTCTCAGCCGCCCGCCG CACAGACGCACGAGTAAAAAGTGCAGCTCCATTGGCTGATCCTCGCTAAGCTCCGAGTTT AGGCGGCACCGGGCGTCCCACGATGCCGAAGAATAAGAAGCGGAACACACCCCACCGTGG TGGCAGTGGTGGCGGCGGCTCAGGGGCAGCCGCAACGACGGCGGCGACGGCAGGTGGCCA GCATCGAAACGTTCAACCTTTTAGTGATGAGGATGCATCGATTGAAACAATGAGCCATTG CAGTGGTTACAGCGATCCTTCCAGTTTTGCTGAAGATGGACCAGAGGTCCTGGATGAGGA AGGAACTCAAGAAGACTTAGAGTACAAGTTGAAGGGATTGATTGACCTAACCCTGGATAA GAGTGCGAAGACAAGGCAGGCAGCTCTTGAAGGTATTAAAAATGCACTGGCTTCAAGGAT GCTTTATGAGTTTATTCTGGAAAGAAGAATGACTTTAACTGATAGCATTGAACGCTGTCT GAAGAAAGGTAAAAGTGATGAGCAGCGTGCAGCTGCAGCCTTGGCGTCTGTTCTTTGTAT TCAGTTGGGTCCTGGAATTGAAAGTGAAGAGGTCTTAAAGACTCTCGGACCCGTCCTGAA GAAGATCATTTGTGATGGAACAGCTAGTATCCAGGCTAGGCAAACTTGTGCAACTTGCTT TGGTGTTTGCTGTTTTATTGCCACAGATGACATCACTGAGCTGTATTCAACTTTGCAGTG TTTGGAAAATATCTTCACCAAGTCTTATCTCAAAGAGAAGGACTCTAATGTAATTTGCAG CACCCCTAACACAGCCCTTCACATCAGCTCGCTTCTCGCGTGGACGTTGTTACTGACCAT ATGCCCACTCAGTGAAGTCAAGAAAAAGCTCGAGATGCATGTCCATAAACTTCCAAGCCT CCTCTCTTCTGATGATGTAAACATGAGAATCGCTGCGGGTGAATCTCTGGCGCTTCTGTT TGAATTGGCCAGAGGAATGGAGAGTGACTTTTTTTATGAAGACATGGAGTCTTTGACTCA GATGTTGAGGGCTTTGGCTACAGATGGAAATAAACACCGGGCCAAAGTCGATAAGAGGAA GCAGCGGTCGGTGTTCAGAGACATCCTGAGGGCGGTGGAGGAACGGGATTTTCCAACAGA AACTGTTAAATTTGGTCCTGAACGCATGTATATTGATTGCTGGGTGAAAAAACGTACTTA TGACACATTTAAGGAGATTCTTGGATCAGGGATGCAGTACCACTTGCAGTCAAATGAATT CCTTCGCAATGTGTTTGAACTTGGACCCCCAGTGATGCTTGATGCTGCAACACTTAAAAC AATGAAGATTTCTCGTTTCGAAAGGCATTTATACAATTCTGCAGCCTTCAAAGCTCGAAC AAAAGCTCGAAGCAAATGTCGAGATAAAAGAGCAGATGTTGGAGAATTCTTCTAGATTTT TAGCATTTGAAGACCTGTAAATACCCCCCTCCCCTTTTTGTAATTTCTAATGTATTTACT CTAGAGACAGTTTTTATCTTGGGCCAACAGCTTTTGTAGTAGGGGTTATATTTAATGTAT AGTATTGCAAATGGTGAGTTCTGATTATTGAATATTCTGTATATATAATCAGTAAACTTG AATGAAGTGTTTGTAATGTTTGGTCATTTTCTATTTATGAAGAGAGCAAAAATATGGTAT TTCACTTGATTTCATGACAAAAAACTATTAGCCAAGGTTAAACTTCTTATGGTGTGGTTG TCAGAAAAATTGATTAGAATGGTATAGATAACTTAAGATCTTAGCCAAATGAGTTCCAGA TATAATTTTGGGAGCTAGTTCTTCTGGAAAAGCTACTATTATTTTCTGTTTTAAATGGAA CCTAATAATTTTGTCACTGGGATCATCAAAGGGAATTATATCATGAGGCCTTTCAGTCCA TCTGTTGGGAGTTAGGATGAACTAGTATCTGCCAGAAAGGTTGCTGACCTTGACCTCTGA GGGCAATAACACTAACTTCACTTGCTGTGTAAGACCTTGTGCTCTTTTTTTTGAAATAAA GATCTTTTCACACCGAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
| 1-295, gnl|bosTau2|chr4 (27630342-27630049) | |
| 1-295, gnl|Hg17|chr7 (111684493-111684790) | |
| 1-295, gnl|Mm7|chr12 (38056225-38055934) | |
| 607-766, gnl|bosTau2|chr4 (27622300-27622141) | |
| 607-766, gnl|Hg17|chr7 (111692865-111693024) | |
| 607-766, gnl|Mm7|chr12 (38047204-38047045) | |
| 818-1002, gnl|bosTau2|chr4 (27619262-27619078) | |
| 818-1002, gnl|canFam2|chr14 (55025664-55025843) | |
| 818-1002, gnl|dasNov1|scaffold_30448 (36380-36201) | |
| 818-1002, gnl|fr1|chrUn (52729701-52729528) | |
| 818-1002, gnl|galGal2|chr1 (23891349-23891170) | |
| 818-1002, gnl|hg17|chr7 (111696001-111696180) | |
| 818-1002, gnl|Hg17|chr7 (111696007-111696191) | |
| 818-1002, gnl|loxAfr1|scaffold_18621 (11444-11604) | |
| 818-1002, gnl|mm7|chr12 (38046192-38046013) | |
| 818-1002, gnl|Mm7|chr12 (38046184-38046000) | |
| 818-1002, gnl|monDom2|scaffold_22 (38067459-38067280) | |
| 818-1002, gnl|oryCun1|scaffold_213336 (84712-84893) | |
| 818-1002, gnl|panTro1|chr6 (113679483-113679662) | |
| 818-1002, gnl|rheMac2|chr3 (149861875-149862054) | |
| 818-1002, gnl|tetNig1|chr19 (4544363-4544184) | |
| 818-1002, gnl|xenTro1|scaffold_17 (546887-547051) | |
| 1106-1241, gnl|bosTau2|chr4 (27614451-27614316) | |
| 1106-1241, gnl|canFam2|chr14 (55029256-55029425) | |
| 1106-1241, gnl|danRer3|chrUn (77053857-77053715) | |
| 1106-1241, gnl|dasNov1|scaffold_127189 (895-770) | |
| 1106-1241, gnl|echTel1|scaffold_176306 (2935-3100) | |
| 1106-1241, gnl|fr1|chrUn (52729268-52729124) | |
| 1106-1241, gnl|galGal2|chr1 (23889410-23889271) | |
| 1106-1241, gnl|hg17|chr7 (111701980-111702146) | |
| 1106-1241, gnl|Hg17|chr7 (111701987-111702122) | |
| 1106-1241, gnl|loxAfr1|scaffold_18621 (16878-17044) | |
| 1106-1241, gnl|mm7|chr12 (38040198-38040037) | |
| 1106-1241, gnl|Mm7|chr12 (38040189-38040054) | |
| 1106-1241, gnl|monDom2|scaffold_22 (38063888-38063723) | |
| 1106-1241, gnl|oryCun1|scaffold_7568 (5870-5703) | |
| 1106-1241, gnl|panTro1|chr6 (113685445-113685611) | |
| 1106-1241, gnl|rheMac2|chr3 (149868084-149868250) | |
| 1106-1241, gnl|rn3|chr8 (112858170-112858308) | |
| 1106-1241, gnl|tetNig1|chr19 (4543908-4543757) | |
| 1106-1241, gnl|xenTro1|scaffold_17 (548998-549152) | |
| 1465-2178, gnl|bosTau2|chr4 (27607439-27606682) | |
| 1465-2178, gnl|Hg17|chr7 (111709435-111710198) | |
| 1465-2178, gnl|Mm7|chr12 (38036518-38035881) |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-295, gnl|bosTau2|chr4 (27630342-27630049) | |
| 1-295, gnl|Hg17|chr7 (111684493-111684790) | |
| 1-295, gnl|Mm7|chr12 (38056225-38055934) | |
| 607-766, gnl|bosTau2|chr4 (27622300-27622141) | |
| 607-766, gnl|Hg17|chr7 (111692865-111693024) | |
| 607-766, gnl|Mm7|chr12 (38047204-38047045) | |
| 818-1002, gnl|bosTau2|chr4 (27619262-27619078) | |
| 818-1002, gnl|canFam2|chr14 (55025664-55025843) | |
| 818-1002, gnl|dasNov1|scaffold_30448 (36380-36201) | |
| 818-1002, gnl|fr1|chrUn (52729701-52729528) | |
| 818-1002, gnl|galGal2|chr1 (23891349-23891170) | |
| 818-1002, gnl|hg17|chr7 (111696001-111696180) | |
| 818-1002, gnl|Hg17|chr7 (111696007-111696191) | |
| 818-1002, gnl|loxAfr1|scaffold_18621 (11444-11604) | |
| 818-1002, gnl|mm7|chr12 (38046192-38046013) | |
| 818-1002, gnl|Mm7|chr12 (38046184-38046000) | |
| 818-1002, gnl|monDom2|scaffold_22 (38067459-38067280) | |
| 818-1002, gnl|oryCun1|scaffold_213336 (84712-84893) | |
| 818-1002, gnl|panTro1|chr6 (113679483-113679662) | |
| 818-1002, gnl|rheMac2|chr3 (149861875-149862054) | |
| 818-1002, gnl|tetNig1|chr19 (4544363-4544184) | |
| 818-1002, gnl|xenTro1|scaffold_17 (546887-547051) | |
| 1106-1241, gnl|bosTau2|chr4 (27614451-27614316) | |
| 1106-1241, gnl|canFam2|chr14 (55029256-55029425) | |
| 1106-1241, gnl|danRer3|chrUn (77053857-77053715) | |
| 1106-1241, gnl|dasNov1|scaffold_127189 (895-770) | |
| 1106-1241, gnl|echTel1|scaffold_176306 (2935-3100) | |
| 1106-1241, gnl|fr1|chrUn (52729268-52729124) | |
| 1106-1241, gnl|galGal2|chr1 (23889410-23889271) | |
| 1106-1241, gnl|hg17|chr7 (111701980-111702146) | |
| 1106-1241, gnl|Hg17|chr7 (111701987-111702122) | |
| 1106-1241, gnl|loxAfr1|scaffold_18621 (16878-17044) | |
| 1106-1241, gnl|mm7|chr12 (38040198-38040037) | |
| 1106-1241, gnl|Mm7|chr12 (38040189-38040054) | |
| 1106-1241, gnl|monDom2|scaffold_22 (38063888-38063723) | |
| 1106-1241, gnl|oryCun1|scaffold_7568 (5870-5703) | |
| 1106-1241, gnl|panTro1|chr6 (113685445-113685611) | |
| 1106-1241, gnl|rheMac2|chr3 (149868084-149868250) | |
| 1106-1241, gnl|rn3|chr8 (112858170-112858308) | |
| 1106-1241, gnl|tetNig1|chr19 (4543908-4543757) | |
| 1106-1241, gnl|xenTro1|scaffold_17 (548998-549152) | |
| 1465-2178, gnl|bosTau2|chr4 (27607439-27606682) | |
| 1465-2178, gnl|Hg17|chr7 (111709435-111710198) | |
| 1465-2178, gnl|Mm7|chr12 (38036518-38035881) |
| Expressed library(ies): 36 entry(ies) | More info |
| Expressed library(ies): 36 entry(ies) | Help | Less info |
| isp (1.65414) | |
| vin (0.997672) | |
| mgm (0.721371) | |
| mga (0.64082) | |
| cbl (0.573987) | |
| sug (0.509165) | |
| tbr (0.462535) | |
| mgp (0.461361) | |
| ski (0.440205) | |
| ssp (0.406559) | |
| pla (0.401016) | |
| ldo (0.38801) | |
| bfe (0.299715) | |
| lin (0.291206) | |
| ste (0.270416) | |
| pan (0.23596) | |
| fcc (0.197785) | |
| aor (0.195274) | |
| nlu (0.191681) | |
| sag (0.182715) | |
| ton (0.1755) | |
| rec (0.17307) | |
| fat (0.147427) | |
| liv (0.146284) | |
| spl (0.143184) | |
| csk (0.140746) | |
| nca (0.136874) | |
| lyg (0.133103) | |
| ute (0.132784) | |
| kid (0.129735) | |
| ret (0.128733) | |
| thg (0.126791) | |
| tra (0.123092) | |
| jca (0.11396) | |
| spc (0.113366) | |
| eje (0.0988338) |
| Expressed library(ies): 36 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| isp (1.65414) | |
| vin (0.997672) | |
| mgm (0.721371) | |
| mga (0.64082) | |
| cbl (0.573987) | |
| sug (0.509165) | |
| tbr (0.462535) | |
| mgp (0.461361) | |
| ski (0.440205) | |
| ssp (0.406559) | |
| pla (0.401016) | |
| ldo (0.38801) | |
| bfe (0.299715) | |
| lin (0.291206) | |
| ste (0.270416) | |
| pan (0.23596) | |
| fcc (0.197785) | |
| aor (0.195274) | |
| nlu (0.191681) | |
| sag (0.182715) | |
| ton (0.1755) | |
| rec (0.17307) | |
| fat (0.147427) | |
| liv (0.146284) | |
| spl (0.143184) | |
| csk (0.140746) | |
| nca (0.136874) | |
| lyg (0.133103) | |
| ute (0.132784) | |
| kid (0.129735) | |
| ret (0.128733) | |
| thg (0.126791) | |
| tra (0.123092) | |
| jca (0.11396) | |
| spc (0.113366) | |
| eje (0.0988338) |