Ss1.1-rpbfe0129_p11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATGTAGCGGGCACATTCACTGAAATCCCTGCTAGCAATATTAGAAGAGTCATCGCCAAGA GATTAACTGAATCAAAAAGTACTATACCTCATGCCTATGCTACTGCTGACTGTGACCTTG GAGCTGTTTTAAAAGTTAGGCAAAATCTGGCCAGAGATGACATTAAAGTATCAGTAAATG ACTTTATCATCAAGGCAGCAGCTGTTACCCTTAAGCAAATGCCAAACGTTAATGCGAGCT GGGATGGAGAGGGCCCCAAGCAGCTACCTTTTATTGACATTTCAGTGGCGGTGGCAACAG ATAAAGGTTTAATTACCCCAATCATAAAAGATGCTGCTGCTAAGGGTCTACAGGAAATTG CTGACTCTGTAAAGGCTCTGTCAAAGAAAGCCAGAGATGGAAAATTGTTACCTGAAGAGT ACCAAGGAGGATCTTTTAGTATTTCCAACTTGGGGATGTTTGGCATCGATGAATTTACTG CAGTGATCAACCCTCCGCAAGCCTGCATCTTGGCTGTTGGGAGATTCCGACCTGTGCTGA AGCTCACTCAGGATGAAGAGGGGAATGCCAAGCTGCAGCAGCACCAGCTCATCACCGTCA CAATGTCAAGCGACAGCCGAGTGGTAGATGATGAACTGGCCACCAGATTTCTTGAAAGTT TTAAAGCAAACCTGGAGAATCCTTTCCGACTTGCCTAGTCCTCTGAGATAAGAAGTTGGT CTTTGACTTCGTCAATTGTATAGCTATTACTGAAAAACTTACACTATACGAAAACGATTA GGTATTTAAGTGTGAAGTGGATGAAATGTTTATTTATTTAAGATGAAAGAGTTTGACCCA GGTTATCCTCTTTATCAACCCGGGTTTAATGTTATAGAACTAAGTAACAAGCTGTAACTA AGAAGAAAGAGAACATTTGGTTAGTCAGATCCATTTTTAATTTAACCACTGGTGCTGTAC AAAATGGATGTTAAACTAGGTGTCAATTAAATCGTATGTTTGGCTCATTGGAGCATTTTA GAATAATTGAGAATGTATAATATATTGTAAAGTCAACTAATTGGTAGAACTCTACCTTAG TTGTGTTGAAGTTAGAAGCGGTCTTCAAAGAGATGCCCGTTAACGTAGCAGTGGGACCTC ACTTCTACAAGCACTGCTCTAGCTATACTTGAACAATTTAATATGTACAGAAGTTTATTC TGGATACTAGTAAATAAGAATCACACTGTATTAGGGGTTGTGGCAACATTATTGGATTTT TTTTTATGTATATAAAGCCATATGTTTTAGAGTGGTTTCTATCAGTCCTATTTTACACAT CTATGACACTGTGAACTAAAAAAGAATTAAAGAAAAATCAAAAGTGAAGAAAAAGAGACC AAAAATTTTGTTTGTTTCAATAATAAACTATAGTTAAAATACCTAAATAAAATTCAGAAA TAAACTGCTCACCTTCATACTGAGTTGGAACATATTTTAAAAAATTATGCTATTTCCTAC CAAACATTTTAAGTTAGTTTTGATGTAAACACAAAATGTTGTTTCATAGTGCATTTTAAT CATGTTTATATTGCAAAATAAAAATGTAAAAAAAAAGTAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATGTAGCGGGCACATTCACTGAAATCCCTGCTAGCAATATTAGAAGAGTCATCGCCAAGA GATTAACTGAATCAAAAAGTACTATACCTCATGCCTATGCTACTGCTGACTGTGACCTTG GAGCTGTTTTAAAAGTTAGGCAAAATCTGGCCAGAGATGACATTAAAGTATCAGTAAATG ACTTTATCATCAAGGCAGCAGCTGTTACCCTTAAGCAAATGCCAAACGTTAATGCGAGCT GGGATGGAGAGGGCCCCAAGCAGCTACCTTTTATTGACATTTCAGTGGCGGTGGCAACAG ATAAAGGTTTAATTACCCCAATCATAAAAGATGCTGCTGCTAAGGGTCTACAGGAAATTG CTGACTCTGTAAAGGCTCTGTCAAAGAAAGCCAGAGATGGAAAATTGTTACCTGAAGAGT ACCAAGGAGGATCTTTTAGTATTTCCAACTTGGGGATGTTTGGCATCGATGAATTTACTG CAGTGATCAACCCTCCGCAAGCCTGCATCTTGGCTGTTGGGAGATTCCGACCTGTGCTGA AGCTCACTCAGGATGAAGAGGGGAATGCCAAGCTGCAGCAGCACCAGCTCATCACCGTCA CAATGTCAAGCGACAGCCGAGTGGTAGATGATGAACTGGCCACCAGATTTCTTGAAAGTT TTAAAGCAAACCTGGAGAATCCTTTCCGACTTGCCTAGTCCTCTGAGATAAGAAGTTGGT CTTTGACTTCGTCAATTGTATAGCTATTACTGAAAAACTTACACTATACGAAAACGATTA GGTATTTAAGTGTGAAGTGGATGAAATGTTTATTTATTTAAGATGAAAGAGTTTGACCCA GGTTATCCTCTTTATCAACCCGGGTTTAATGTTATAGAACTAAGTAACAAGCTGTAACTA AGAAGAAAGAGAACATTTGGTTAGTCAGATCCATTTTTAATTTAACCACTGGTGCTGTAC AAAATGGATGTTAAACTAGGTGTCAATTAAATCGTATGTTTGGCTCATTGGAGCATTTTA GAATAATTGAGAATGTATAATATATTGTAAAGTCAACTAATTGGTAGAACTCTACCTTAG TTGTGTTGAAGTTAGAAGCGGTCTTCAAAGAGATGCCCGTTAACGTAGCAGTGGGACCTC ACTTCTACAAGCACTGCTCTAGCTATACTTGAACAATTTAATATGTACAGAAGTTTATTC TGGATACTAGTAAATAAGAATCACACTGTATTAGGGGTTGTGGCAACATTATTGGATTTT TTTTTATGTATATAAAGCCATATGTTTTAGAGTGGTTTCTATCAGTCCTATTTTACACAT CTATGACACTGTGAACTAAAAAAGAATTAAAGAAAAATCAAAAGTGAAGAAAAAGAGACC AAAAATTTTGTTTGTTTCAATAATAAACTATAGTTAAAATACCTAAATAAAATTCAGAAA TAAACTGCTCACCTTCATACTGAGTTGGAACATATTTTAAAAAATTATGCTATTTCCTAC CAAACATTTTAAGTTAGTTTTGATGTAAACACAAAATGTTGTTTCATAGTGCATTTTAAT CATGTTTATATTGCAAAATAAAAATGTAAAAAAAAAGTAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 556-675, - strand, RNAz p=0.713345 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 556-675, - strand, RNAz p=0.713345 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 8-160, gnl|bosTau2|chr15 (40156118-40155966) | |
| 8-160, gnl|canFam2|chr18 (35985657-35985487) | |
| 8-160, gnl|dasNov1|scaffold_9059 (42603-42464) | |
| 8-160, gnl|echTel1|scaffold_287581 (6293-6122) | |
| 8-160, gnl|fr1|chrUn (165625726-165625567) | |
| 8-160, gnl|galGal2|chr5 (15818667-15818837) | |
| 8-160, gnl|hg17|chr11 (34948263-34948435) | |
| 8-160, gnl|Hg17|chr11 (34948261-34948413) | |
| 8-160, gnl|loxAfr1|scaffold_5280 (27712-27883) | |
| 8-160, gnl|mm7|chr2 (102884098-102883928) | |
| 8-160, gnl|Mm7|chr2 (102884098-102883946) | |
| 8-160, gnl|monDom2|scaffold_10 (81480555-81480726) | |
| 8-160, gnl|oryCun1|scaffold_213085 (4505-4678) | |
| 8-160, gnl|panTro1|chr9 (35357792-35357964) | |
| 8-160, gnl|rheMac2|chr14 (36857356-36857184) | |
| 8-160, gnl|rn3|chr3 (88156050-88155878) | |
| 8-160, gnl|tetNig1|chr13 (5425377-5425526) | |
| 8-160, gnl|xenTro1|scaffold_266 (1374198-1374026) | |
| 214-375, gnl|bosTau2|chr15 (40150141-40149980) | |
| 214-375, gnl|Hg17|chr11 (34962691-34962852) | |
| 214-375, gnl|Mm7|chr2 (102879222-102879062) | |
| 437-1601, gnl|bosTau2|chr15 (40142235-40141076) | |
| 437-1601, gnl|Hg17|chr11 (34973034-34974188) | |
| 437-1601, gnl|Mm7|chr2 (102873059-102871875) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 8-160, gnl|bosTau2|chr15 (40156118-40155966) | |
| 8-160, gnl|canFam2|chr18 (35985657-35985487) | |
| 8-160, gnl|dasNov1|scaffold_9059 (42603-42464) | |
| 8-160, gnl|echTel1|scaffold_287581 (6293-6122) | |
| 8-160, gnl|fr1|chrUn (165625726-165625567) | |
| 8-160, gnl|galGal2|chr5 (15818667-15818837) | |
| 8-160, gnl|hg17|chr11 (34948263-34948435) | |
| 8-160, gnl|Hg17|chr11 (34948261-34948413) | |
| 8-160, gnl|loxAfr1|scaffold_5280 (27712-27883) | |
| 8-160, gnl|mm7|chr2 (102884098-102883928) | |
| 8-160, gnl|Mm7|chr2 (102884098-102883946) | |
| 8-160, gnl|monDom2|scaffold_10 (81480555-81480726) | |
| 8-160, gnl|oryCun1|scaffold_213085 (4505-4678) | |
| 8-160, gnl|panTro1|chr9 (35357792-35357964) | |
| 8-160, gnl|rheMac2|chr14 (36857356-36857184) | |
| 8-160, gnl|rn3|chr3 (88156050-88155878) | |
| 8-160, gnl|tetNig1|chr13 (5425377-5425526) | |
| 8-160, gnl|xenTro1|scaffold_266 (1374198-1374026) | |
| 214-375, gnl|bosTau2|chr15 (40150141-40149980) | |
| 214-375, gnl|Hg17|chr11 (34962691-34962852) | |
| 214-375, gnl|Mm7|chr2 (102879222-102879062) | |
| 437-1601, gnl|bosTau2|chr15 (40142235-40141076) | |
| 437-1601, gnl|Hg17|chr11 (34973034-34974188) | |
| 437-1601, gnl|Mm7|chr2 (102873059-102871875) |
| Expressed library(ies): 26 entry(ies) | More info |
| Expressed library(ies): 26 entry(ies) | Help | Less info |
| bfe (0.899146) | |
| lyg (0.798616) | |
| cbe (0.717703) | |
| vin (0.665115) | |
| tbr (0.616713) | |
| kid (0.518941) | |
| isp (0.451128) | |
| ova (0.387397) | |
| gul (0.355177) | |
| sme (0.305437) | |
| lin (0.291206) | |
| ldo (0.291008) | |
| ret (0.257467) | |
| spc (0.226732) | |
| hea (0.204499) | |
| aor (0.195274) | |
| duo (0.172801) | |
| cut (0.169924) | |
| fco (0.157208) | |
| ski (0.146735) | |
| spl (0.143184) | |
| hlv (0.139256) | |
| bla (0.124347) | |
| med (0.116252) | |
| cty (0.10408) | |
| nbm (0.0993246) |
| Expressed library(ies): 26 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| bfe (0.899146) | |
| lyg (0.798616) | |
| cbe (0.717703) | |
| vin (0.665115) | |
| tbr (0.616713) | |
| kid (0.518941) | |
| isp (0.451128) | |
| ova (0.387397) | |
| gul (0.355177) | |
| sme (0.305437) | |
| lin (0.291206) | |
| ldo (0.291008) | |
| ret (0.257467) | |
| spc (0.226732) | |
| hea (0.204499) | |
| aor (0.195274) | |
| duo (0.172801) | |
| cut (0.169924) | |
| fco (0.157208) | |
| ski (0.146735) | |
| spl (0.143184) | |
| hlv (0.139256) | |
| bla (0.124347) | |
| med (0.116252) | |
| cty (0.10408) | |
| nbm (0.0993246) |