Non-Coding RNA Search

Ss1.1-rpbfe0130_b3.5

Sequence:


               
               AAAAGGTCTCACTGAAGAATAAAAATGAAAATTATGTCCAGTTCCATTCTATTGCCCTCT
GAAAAAGGTTCAGAAATGATTATTCTCCGAAGGGTACATTTCTTTCTCAATGTGTCATTT
CAGCATTTGGATCTTCATGCCACAGTTGCTTGTTGGAACTTTTGCCTTCATGAGTGGAAT
ACTAACATTCATGCTTCCAGAAACCCTCCGGAAGCCTCTGGCAACTACTTGGAAAGAGAC
TGAAAAACAGAGCAGTTCAGACAAATGAAGTCCCACAACCAAAAATACGGCATTGAAAAA
TATCGAAGTGATTAACTCTGGGCGTTCTGGTCTTAAGAAATAACCATGGCTGGTGTGCTG
TCTAGCACGTGAAATATTAATGCCTTTGTATTAGAGGAACATTATTCTCATCTCCTGCAT
GTCGTGTATATGTGTCTTTTTTTAAATTTTGTAAAAGGGTTTTGAAAAAATTGTTTTGTA
AAAGTAGAAGAAATAAAAAACAAGATGAGAATTCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAGGTCTCACTGAAGAATAAAAATGAAAATTATGTCCAGTTCCATTCTATTGCCCTCT
GAAAAAGGTTCAGAAATGATTATTCTCCGAAGGGTACATTTCTTTCTCAATGTGTCATTT
CAGCATTTGGATCTTCATGCCACAGTTGCTTGTTGGAACTTTTGCCTTCATGAGTGGAAT
ACTAACATTCATGCTTCCAGAAACCCTCCGGAAGCCTCTGGCAACTACTTGGAAAGAGAC
TGAAAAACAGAGCAGTTCAGACAAATGAAGTCCCACAACCAAAAATACGGCATTGAAAAA
TATCGAAGTGATTAACTCTGGGCGTTCTGGTCTTAAGAAATAACCATGGCTGGTGTGCTG
TCTAGCACGTGAAATATTAATGCCTTTGTATTAGAGGAACATTATTCTCATCTCCTGCAT
GTCGTGTATATGTGTCTTTTTTTAAATTTTGTAAAAGGGTTTTGAAAAAATTGTTTTGTA
AAAGTAGAAGAAATAAAAAACAAGATGAGAATTCTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               166-270, + strand, RNAz p=0.596424

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               166-270, + strand, RNAz p=0.596424

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AB055798, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AB055798, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-515, gnl|bosTau2|chr9 (22610127-22610646)
               

               
               1-515, gnl|Hg17|chr6 (110853126-110852595)
               

               
               1-515, gnl|Mm7|chr10 (40390900-40391676)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-515, gnl|bosTau2|chr9 (22610127-22610646)
               

               
               1-515, gnl|Hg17|chr6 (110853126-110852595)
               

               
               1-515, gnl|Mm7|chr10 (40390900-40391676)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               bfe (0.299715)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bfe (0.299715)

	1-515, gnl\|bosTau2\|chr9 (22610127-22610646)
	1-515, gnl\|Hg17\|chr6 (110853126-110852595)
	1-515, gnl\|Mm7\|chr10 (40390900-40391676)