Non-Coding RNA Search

Ss1.1-rpbfe0131_n9.5

Sequence:


               
               GCTCTTACTTGAATGAAAGTCTGATATTTGCTGACGGCAGAGTGATTATTTTATACTCTG
ATTGATATTTAGGTAGATTGTCTGGTGCTCTCAGTTGTTTTTATTTATATTTGTTGTTTT
TGTTGAAAAAGAATTTTAACACGATAGAAGACTTTGTGACAAGATAAGCCTCCTGTTACA
TAGTTTTTGGATTCAACTGAGGGATCCAAAAACTAGTGGTAAAAATGCCTGCAAACAATC
TTGGCAGTTATTTTATAGCCAGAGAATACTGTCTTAAATAGTCTGTTCCTTTTAAATTCT
TTCAAAAGGCAAAACAGGATTGCCCTGTATTATGTACAAATAAAAATGTTTGCACACAGA
GCTTGTATGGTTTGCTGGGTCAAACAATGTTTCCAACCTAAAATCTTATCTCATTTCCAC
TTTAACTACTTTTAGTTGTATTTATTAAATAATGCAGTTTGTACTTTTTTATTTTGTAAC
ATTTTGTGATTTTTTTTGTACAGTACTGTATTTGTACAATAGAGCAATTCTAGCTGATGG
AATGAATGAATAAAATGTGTAATTTTACTTTTAAAAAAATAAATAAAAAATAAGAACCAG
TAATCTAACCAAACACCTGTTATTAGAAATAGACCTCATCTACCCTTCTTTGTGGGTTGA
TTTGCAAAGTTTTAAATATTTTGAAATGTCATTTAAGCTAAGAAAATGATTTAGAATGAT
TCCTGATCTTTTCGTATCTTACAGTTGCAGGTAGAATATGGAAAATGTCAGCTGCAAATG
AAAGAGCTGATGAAAAAATTTAAGGAAATACAGACACAGAATTTCAGCTTGAAAAATGAA
AACCAATCCCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTCTTACTTGAATGAAAGTCTGATATTTGCTGACGGCAGAGTGATTATTTTATACTCTG
ATTGATATTTAGGTAGATTGTCTGGTGCTCTCAGTTGTTTTTATTTATATTTGTTGTTTT
TGTTGAAAAAGAATTTTAACACGATAGAAGACTTTGTGACAAGATAAGCCTCCTGTTACA
TAGTTTTTGGATTCAACTGAGGGATCCAAAAACTAGTGGTAAAAATGCCTGCAAACAATC
TTGGCAGTTATTTTATAGCCAGAGAATACTGTCTTAAATAGTCTGTTCCTTTTAAATTCT
TTCAAAAGGCAAAACAGGATTGCCCTGTATTATGTACAAATAAAAATGTTTGCACACAGA
GCTTGTATGGTTTGCTGGGTCAAACAATGTTTCCAACCTAAAATCTTATCTCATTTCCAC
TTTAACTACTTTTAGTTGTATTTATTAAATAATGCAGTTTGTACTTTTTTATTTTGTAAC
ATTTTGTGATTTTTTTTGTACAGTACTGTATTTGTACAATAGAGCAATTCTAGCTGATGG
AATGAATGAATAAAATGTGTAATTTTACTTTTAAAAAAATAAATAAAAAATAAGAACCAG
TAATCTAACCAAACACCTGTTATTAGAAATAGACCTCATCTACCCTTCTTTGTGGGTTGA
TTTGCAAAGTTTTAAATATTTTGAAATGTCATTTAAGCTAAGAAAATGATTTAGAATGAT
TCCTGATCTTTTCGTATCTTACAGTTGCAGGTAGAATATGGAAAATGTCAGCTGCAAATG
AAAGAGCTGATGAAAAAATTTAAGGAAATACAGACACAGAATTTCAGCTTGAAAAATGAA
AACCAATCCCCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               158-272, + strand, RNAz p=0.992868

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               158-272, + strand, RNAz p=0.992868

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AB188491, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AB188491, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-573, gnl|bosTau2|chr13 (11447172-11446607)
               

               
               1-573, gnl|Hg17|chr10 (23770553-23771111)
               

               
               1-573, gnl|Mm7|chr2 (19725247-19725742)
               


               
               591-819, gnl|bosTau2|chr9 (33199780-33199552)
               

               
               591-819, gnl|Hg17|chr6 (90621763-90621984)
               

               
               591-819, gnl|Mm7|chr4 (32909962-32910285)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-573, gnl|bosTau2|chr13 (11447172-11446607)
               

               
               1-573, gnl|Hg17|chr10 (23770553-23771111)
               

               
               1-573, gnl|Mm7|chr2 (19725247-19725742)
               


               
               591-819, gnl|bosTau2|chr9 (33199780-33199552)
               

               
               591-819, gnl|Hg17|chr6 (90621763-90621984)
               

               
               591-819, gnl|Mm7|chr4 (32909962-32910285)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               bfe (1.79829)
               

               
               isp (0.451128)
               

               
               vin (0.332557)
               

               
               sme (0.305437)
               

               
               fce (0.271592)
               

               
               ret (0.257467)
               

               
               mgp (0.230681)
               

               
               mga (0.160205)
               

               
               fat (0.147427)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bfe (1.79829)
               

               
               isp (0.451128)
               

               
               vin (0.332557)
               

               
               sme (0.305437)
               

               
               fce (0.271592)
               

               
               ret (0.257467)
               

               
               mgp (0.230681)
               

               
               mga (0.160205)
               

               
               fat (0.147427)

	1-573, gnl\|bosTau2\|chr13 (11447172-11446607)
	1-573, gnl\|Hg17\|chr10 (23770553-23771111)
	1-573, gnl\|Mm7\|chr2 (19725247-19725742)

	591-819, gnl\|bosTau2\|chr9 (33199780-33199552)
	591-819, gnl\|Hg17\|chr6 (90621763-90621984)
	591-819, gnl\|Mm7\|chr4 (32909962-32910285)

	bfe (1.79829)
	isp (0.451128)
	vin (0.332557)
	sme (0.305437)
	fce (0.271592)
	ret (0.257467)
	mgp (0.230681)
	mga (0.160205)
	fat (0.147427)