Non-Coding RNA Search

Ss1.1-rpbfe0132_l20.5

Sequence:


               
               ACAAATATATACTGAATAAATGATGAAAGTGACATTCAAATCAGTAGGTGAAGAATGGAT
GGTTCAAAAATAGTAAAATAGATATCTTAAATAGATGTCTTAAACATCATAACCATTTGA
GAAAAAAACAATTTCAGATCTCTAACTTACAAAAATTAATTCCAGCTAGAGTAGCAGTGA
GTCTTATGCTTTTTGGTCACATATTCCTTTTAGAAATACCTCTGTGAAAATGCACATAAG
CAAAAAAGTTTTATAAGTAAGTTATAATGAGATGCCTAACTTTAGCCAAAAAAGGGAAAT
GCACATTAAAACATGAGAAACTATCTCTGATCCAATTGGCAAATATTTAAAGTAAATATG
AATCAAGAGAGTGGAGAAACAAGAATCCCACATTGTTGGTGAGTATATAAATGAATACGG
ACACTTTTAAAGGCAATTGAGTGGTAGCCATTACAATTTTAAAATCACATACTCTGTAAC
CCAATAATTCCATTTTTTTTTAAAGAACACACTTTTGTTCACAAGGTGGCTTATGCAATG
ATGTCTGCTATACCTTTGGTTATAACAGTATAAAATTAGGAAAACCAAAATACCCCTCAT
CAAGATGGAGCATGGAAAACATTATAAAATACTAGGTATCAATGAAAAGGAATGAGAGTC
CTACATGCACTGACATGGAAAGATACAATGTTAAGTTTTTTGAAGTTTAGGGGGAAATCG
AAGGACAATACACGAAATACCTATGATGCCATTGAGGTTAAAACACATACCACACATCCA
CACACACAAATACTGTATAGTGTACATCTTAAGTACCTAAGTGTGTATTATAAAAATGTA
TAGAGAAGGTCTGAAAGGGTACTAACCAAACTGTTCACAGTAGTTTGGTGGAGTGCATTA
GCTTTACCTGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAAATATATACTGAATAAATGATGAAAGTGACATTCAAATCAGTAGGTGAAGAATGGAT
GGTTCAAAAATAGTAAAATAGATATCTTAAATAGATGTCTTAAACATCATAACCATTTGA
GAAAAAAACAATTTCAGATCTCTAACTTACAAAAATTAATTCCAGCTAGAGTAGCAGTGA
GTCTTATGCTTTTTGGTCACATATTCCTTTTAGAAATACCTCTGTGAAAATGCACATAAG
CAAAAAAGTTTTATAAGTAAGTTATAATGAGATGCCTAACTTTAGCCAAAAAAGGGAAAT
GCACATTAAAACATGAGAAACTATCTCTGATCCAATTGGCAAATATTTAAAGTAAATATG
AATCAAGAGAGTGGAGAAACAAGAATCCCACATTGTTGGTGAGTATATAAATGAATACGG
ACACTTTTAAAGGCAATTGAGTGGTAGCCATTACAATTTTAAAATCACATACTCTGTAAC
CCAATAATTCCATTTTTTTTTAAAGAACACACTTTTGTTCACAAGGTGGCTTATGCAATG
ATGTCTGCTATACCTTTGGTTATAACAGTATAAAATTAGGAAAACCAAAATACCCCTCAT
CAAGATGGAGCATGGAAAACATTATAAAATACTAGGTATCAATGAAAAGGAATGAGAGTC
CTACATGCACTGACATGGAAAGATACAATGTTAAGTTTTTTGAAGTTTAGGGGGAAATCG
AAGGACAATACACGAAATACCTATGATGCCATTGAGGTTAAAACACATACCACACATCCA
CACACACAAATACTGTATAGTGTACATCTTAAGTACCTAAGTGTGTATTATAAAAATGTA
TAGAGAAGGTCTGAAAGGGTACTAACCAAACTGTTCACAGTAGTTTGGTGGAGTGCATTA
GCTTTACCTGTA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               64-912, gnl|bosTau2|chr1 (75072368-75073232)
               

               
               64-912, gnl|Hg17|chr3 (151665580-151666831)
               

               
               64-912, gnl|Mm7|chr3 (58594720-58595481)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               64-912, gnl|bosTau2|chr1 (75072368-75073232)
               

               
               64-912, gnl|Hg17|chr3 (151665580-151666831)
               

               
               64-912, gnl|Mm7|chr3 (58594720-58595481)

Expressed library(ies): 8 entry(ies)

More info

Expressed library(ies): 8 entry(ies)

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               ecc (0.23007)
               

               
               fbs (0.175346)
               

               
               nje (0.16592)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               lyg (0.133103)
               

               
               med (0.116252)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.23007)
               

               
               fbs (0.175346)
               

               
               nje (0.16592)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               lyg (0.133103)
               

               
               med (0.116252)

	64-912, gnl\|bosTau2\|chr1 (75072368-75073232)
	64-912, gnl\|Hg17\|chr3 (151665580-151666831)
	64-912, gnl\|Mm7\|chr3 (58594720-58595481)

	ecc (0.23007)
	fbs (0.175346)
	nje (0.16592)
	bfe (0.149858)
	liv (0.146284)
	lin (0.145603)
	lyg (0.133103)
	med (0.116252)