Non-Coding RNA Search

Ss1.1-rpbfe0134_d16.5

Sequence:


               
               AGGCATCAGGCCTGAAGGCTGAGAGCAAAACTGACCATTCTTCAGAAACCTTCCCCTGAC
CCCTCCTTAACATGTTGAGTGATGACCACACCAATCACTGTATCTTACAGATATTTTTCA
TATAGGTTTTTAGTTAAAACATCTCCTGCCTAAAATGCATTGAATATTTTAAGATAACAA
ATATAGCAGCTGGAGGTTTGTTCAACACTATTTTTATTTAAGCTTATACAAACTGAGCGA
AGAATAGATTATTTGTGATCAGATGCAGTCACCTGGGTTTTCTGTGGGTGGACAGCCCCT
CACCACCCCAGCAGCACCCAAGGGGTGCAGCCTTTACTGGATTTACAAAAGCAGGATGAT
AAAACTGATGTTGGAGCATAATCCTGATGGTGTGTGGAGATGAGCCAGCTGGCTGCTGTC
CGTGTGCAGGATAAAGCTATACCTTCCACCCTCAGATCCTTCCGCCCATGGCCAGAGGCT
TCGACAGTCTTGAAGCATGAGGGTGTGGTAAGGGGCTGCAAAGAGACACCTGCACTTGAA
ATTGCAGTAACTTTGTGAGCTGGCTCCAGACAAACCAATTAAGATGTAGATAGGGATTAA
TTTAAAAGTTTGTTCTTTAAAAACAAAAACGAGAAACCACCTCATTTTCAGTTTAACATG
TGCTATTAAATAGATAACATCCTGTGGATTTAGGGATATTTTCCAGCCAGAATGGATCCA
GAAGAATTGAATGGTGCTTAAATTGAGAAATAATAAATATATCTATATAGACTAGACATA
TCCCCACTGTATATTAATTGAGGTTACAGAAGTTCTTTATATAAAACTTATTTAAATTTT
TCATATTTCATCTTTGAAAAAAGTCTAATTGAGAAAAATCCATAATATTTTCTGGTATGA
AAGTTTGACAGTATTAATATTTTTTTTATATTTTCTTAAATCATTAAACCATTTTAATAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGCATCAGGCCTGAAGGCTGAGAGCAAAACTGACCATTCTTCAGAAACCTTCCCCTGAC
CCCTCCTTAACATGTTGAGTGATGACCACACCAATCACTGTATCTTACAGATATTTTTCA
TATAGGTTTTTAGTTAAAACATCTCCTGCCTAAAATGCATTGAATATTTTAAGATAACAA
ATATAGCAGCTGGAGGTTTGTTCAACACTATTTTTATTTAAGCTTATACAAACTGAGCGA
AGAATAGATTATTTGTGATCAGATGCAGTCACCTGGGTTTTCTGTGGGTGGACAGCCCCT
CACCACCCCAGCAGCACCCAAGGGGTGCAGCCTTTACTGGATTTACAAAAGCAGGATGAT
AAAACTGATGTTGGAGCATAATCCTGATGGTGTGTGGAGATGAGCCAGCTGGCTGCTGTC
CGTGTGCAGGATAAAGCTATACCTTCCACCCTCAGATCCTTCCGCCCATGGCCAGAGGCT
TCGACAGTCTTGAAGCATGAGGGTGTGGTAAGGGGCTGCAAAGAGACACCTGCACTTGAA
ATTGCAGTAACTTTGTGAGCTGGCTCCAGACAAACCAATTAAGATGTAGATAGGGATTAA
TTTAAAAGTTTGTTCTTTAAAAACAAAAACGAGAAACCACCTCATTTTCAGTTTAACATG
TGCTATTAAATAGATAACATCCTGTGGATTTAGGGATATTTTCCAGCCAGAATGGATCCA
GAAGAATTGAATGGTGCTTAAATTGAGAAATAATAAATATATCTATATAGACTAGACATA
TCCCCACTGTATATTAATTGAGGTTACAGAAGTTCTTTATATAAAACTTATTTAAATTTT
TCATATTTCATCTTTGAAAAAAGTCTAATTGAGAAAAATCCATAATATTTTCTGGTATGA
AAGTTTGACAGTATTAATATTTTTTTTATATTTTCTTAAATCATTAAACCATTTTAATAT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-960, gnl|bosTau2|chr18 (37967142-37968070)
               

               
               1-960, gnl|Hg17|chr19 (39536059-39537001)
               

               
               1-960, gnl|Mm7|chr7 (31126082-31125188)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-960, gnl|bosTau2|chr18 (37967142-37968070)
               

               
               1-960, gnl|Hg17|chr19 (39536059-39537001)
               

               
               1-960, gnl|Mm7|chr7 (31126082-31125188)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

Help | Less info


               
               fco (0.157208)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               nca (0.136874)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.157208)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               nca (0.136874)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)

	1-960, gnl\|bosTau2\|chr18 (37967142-37968070)
	1-960, gnl\|Hg17\|chr19 (39536059-39537001)
	1-960, gnl\|Mm7\|chr7 (31126082-31125188)

	fco (0.157208)
	isp (0.150376)
	bfe (0.149858)
	nca (0.136874)
	bla (0.124347)
	pgl (0.118483)