Non-Coding RNA Search

Ss1.1-rpbfe0134_j24.5

Sequence:


               
               GGGGCTTCACAGGGTTGCTGCATCCAGCCACATTGGCTGTGCCATTTCTGTCTGGTCAAG
GTGGGTGGAGCCCACCCCCCCTCCCCGCCCCGGTCGGGGCTTATACCACTTAGCCAATTG
GACTCCCAAGAAACTGGAACAGAAGCAGTCATTCTATTAAATGCTTCTGCTGTGTTCACA
CACCTACAGCGCCTGCACACCACGTCAGGGTTGTTCAAGGGCACCTGGGAAGGTTAAAGA
CCCTCTGGGAGAGAGCACAGAATAATTTTCTGCGGGGTGCTGCCAGGCCGAATCAAGTGA
ACAGAATTCCCGATCCAGAAAGTGAGATGAAAACAGTTGTCGCAGAAGGCAGTTTTCAAC
TCACGTTAGCCCGTGTCTTTGTTTGGGTCTTCAGGGACAAAAGAAACTCCCAGCCTTCTG
ATTCTGACAGTGAGAGCCTCCTGAGTTTAATTCATACTAATGTGGCTCAGAGCCCTGGGC
TGGCCATTCGTGAGTGCCTGAGATGGGTTGACATCGGCCGTGTCAGGAGTCTTAGTTTTC
ATGGGAAAAGAAGTGTGTGGGAGGCAAAGAAAAGAACGAGACTTTCACCACCTTTATTTT
AAAACAGTCTACTTAGGAACGGAGCTTCTAGAGACAAGTATAAAATAGCCAGAGATTCTA
TTCACAGTGTACAAGTGTGTCAAATCATCACATTATACATTTTAAATAGCTTGCAATTTC
CTTTGTTGATTATACCTCAACAGAGCTGAAAAGGAAAAAAAAGAAAAAAATAACAAGAGA
CTCCAGAGAAAGACAAATCCTTGGGTTTCACTCATGTTGCGTTCAGATGCATTTGCTGTA
ATCCATATAGGCCGTCTGTGAATCATTCTTATGCCCTGTGTTTTGTTTTGTTTTGTTTTT
TTTCCAATTATGTTCCAGGTCTTAAGTCATTTTTTTTTTCACATTTCCTGTAAATAGTGG
ATAATCGTTTTTTTATTTTATTTTTAAGTGCTGTGTTAACAATGTGGATAGACCATAAAT
GTACTTGCTGAATTCATACATTTTTTTTTAACAAGCCAATAAAGTTTTATAATTCAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGCTTCACAGGGTTGCTGCATCCAGCCACATTGGCTGTGCCATTTCTGTCTGGTCAAG
GTGGGTGGAGCCCACCCCCCCTCCCCGCCCCGGTCGGGGCTTATACCACTTAGCCAATTG
GACTCCCAAGAAACTGGAACAGAAGCAGTCATTCTATTAAATGCTTCTGCTGTGTTCACA
CACCTACAGCGCCTGCACACCACGTCAGGGTTGTTCAAGGGCACCTGGGAAGGTTAAAGA
CCCTCTGGGAGAGAGCACAGAATAATTTTCTGCGGGGTGCTGCCAGGCCGAATCAAGTGA
ACAGAATTCCCGATCCAGAAAGTGAGATGAAAACAGTTGTCGCAGAAGGCAGTTTTCAAC
TCACGTTAGCCCGTGTCTTTGTTTGGGTCTTCAGGGACAAAAGAAACTCCCAGCCTTCTG
ATTCTGACAGTGAGAGCCTCCTGAGTTTAATTCATACTAATGTGGCTCAGAGCCCTGGGC
TGGCCATTCGTGAGTGCCTGAGATGGGTTGACATCGGCCGTGTCAGGAGTCTTAGTTTTC
ATGGGAAAAGAAGTGTGTGGGAGGCAAAGAAAAGAACGAGACTTTCACCACCTTTATTTT
AAAACAGTCTACTTAGGAACGGAGCTTCTAGAGACAAGTATAAAATAGCCAGAGATTCTA
TTCACAGTGTACAAGTGTGTCAAATCATCACATTATACATTTTAAATAGCTTGCAATTTC
CTTTGTTGATTATACCTCAACAGAGCTGAAAAGGAAAAAAAAGAAAAAAATAACAAGAGA
CTCCAGAGAAAGACAAATCCTTGGGTTTCACTCATGTTGCGTTCAGATGCATTTGCTGTA
ATCCATATAGGCCGTCTGTGAATCATTCTTATGCCCTGTGTTTTGTTTTGTTTTGTTTTT
TTTCCAATTATGTTCCAGGTCTTAAGTCATTTTTTTTTTCACATTTCCTGTAAATAGTGG
ATAATCGTTTTTTTATTTTATTTTTAAGTGCTGTGTTAACAATGTGGATAGACCATAAAT
GTACTTGCTGAATTCATACATTTTTTTTTAACAAGCCAATAAAGTTTTATAATTCAAAAA
AAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               448-566, + strand, RNAz p=0.662224

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               448-566, + strand, RNAz p=0.662224

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               98-1076, gnl|bosTau2|chr8 (43078683-43079655)
               

               
               98-1076, gnl|Hg17|chr9 (84659316-84660171)
               

               
               98-1076, gnl|Mm7|chr13 (58030877-58031699)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               98-1076, gnl|bosTau2|chr8 (43078683-43079655)
               

               
               98-1076, gnl|Hg17|chr9 (84659316-84660171)
               

               
               98-1076, gnl|Mm7|chr13 (58030877-58031699)

Expressed library(ies): 24 entry(ies)

More info

Expressed library(ies): 24 entry(ies)

Help | Less info


               
               aor (0.976372)
               

               
               spc (0.906927)
               

               
               fbs (0.701385)
               

               
               fcc (0.39557)
               

               
               cmu (0.372787)
               

               
               gul (0.355177)
               

               
               hyp (0.285673)
               

               
               fce (0.271592)
               

               
               cbe (0.239234)
               

               
               ebs (0.236602)
               

               
               mgm (0.180343)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               bfe (0.149858)
               

               
               pty (0.142714)
               

               
               csk (0.140746)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)

Expressed library(ies): 24 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.976372)
               

               
               spc (0.906927)
               

               
               fbs (0.701385)
               

               
               fcc (0.39557)
               

               
               cmu (0.372787)
               

               
               gul (0.355177)
               

               
               hyp (0.285673)
               

               
               fce (0.271592)
               

               
               cbe (0.239234)
               

               
               ebs (0.236602)
               

               
               mgm (0.180343)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               bfe (0.149858)
               

               
               pty (0.142714)
               

               
               csk (0.140746)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)

	98-1076, gnl\|bosTau2\|chr8 (43078683-43079655)
	98-1076, gnl\|Hg17\|chr9 (84659316-84660171)
	98-1076, gnl\|Mm7\|chr13 (58030877-58031699)

	aor (0.976372)
	spc (0.906927)
	fbs (0.701385)
	fcc (0.39557)
	cmu (0.372787)
	gul (0.355177)
	hyp (0.285673)
	fce (0.271592)
	cbe (0.239234)
	ebs (0.236602)
	mgm (0.180343)
	fhi (0.169578)
	mga (0.160205)
	fco (0.157208)
	bfe (0.149858)
	pty (0.142714)
	csk (0.140746)
	lyg (0.133103)
	kid (0.129735)
	ova (0.129132)
	ret (0.128733)
	sug (0.127291)
	eru (0.120048)
	ecc (0.115035)