Non-Coding RNA Search

Ss1.1-rpbfe0135_c15.5

Sequence:


               
               TGGGGTGAGAGTTAGCAGCTTCAAAGATATCTAGCTGAATCTTCACCCTCAAGAAGCTTG
GAGATATGCAAAGGAATTTTCAAACAATCAAAAGTCAGGGTGAGCAGGATAAGGCAAAAG
GGAAAGTGTTCCATGCACCTGCAAAGATAAAGTGTGCCAAGACTGTATTTATATGTTTTA
TACCTATATTGGAATGATTATATAGAAAATGCTCTTGCAAAAAGTTAAAGCTATTTCTCA
ATATGGTATCTTGGTGATTTAGGAATAATTGTAAATATATGTTATGAATCTTCTTAAATA
CATATATATACATATATGTGTGTGACACACACACACACACATATATACTCAGAGTTGTAA
AAAGTGCATCTGGCTATTGGTTCAAGTTTGTTCTAACACAATGAGTACCTTTGAGCACAT
GTGACAGAAGCAAAACCACTTTCCAAACATGGCATCAGCAGCTCAGCTTAGGGAGAGTAA
TTCACAGATCAGTGCACCCTGTATCTTATCTTCACCTGTGCTAACCAGCTTTTAGGGGAG
ACCACCAGATGTAGCCCTAACTTTATCACTTAGTAAATATTTAAACTGAAGCCATGTACT
CAACGTCTCTGGGCTCTTGGTTCTTCACCTGTCAAAGGAAAATAATCATGGCTGCTGTCA
TTGTCATGTAAGATTGTTGTAAACTCCAGAGAGATGCTTTGCAAAGTATCATACAATTGA
AAGGTGCTTTGTGCTGACCATCAGATTTTGTCAAATCAGGTGTGAACATGAACTACACTC
CCAAAGAAAAGTCTCTTCATTTAAAAATAAAATGACTGCGATCAGGCAAGGAAGTAGGAA
CATCTGATATTGAATACGTGCAGATATATGTAATCATGTGTTTATCTGTACATGGACCTT
ACCATACAAATTCATTTTCTCCACATGAGCAAAGTAATACTGATACGGGCCAATGCATTT
TGGAATGTTCTTATTATGTAGAACTGAATGTGAAAACTATTTTTGTTAAAACAGGATTTT
ACCACATGATTGTTTAAGTATCACTTCTGTGAAATATAGCAGAAATCGGAGCTTGAGAAA
GTATAAAGCTTGCTTTTCATCTGACTCATTCACTTGGATGATTCTGTGACTCAGATAAAA
CAGGGTGTTAATGAGACCAGACACTTCCCCCGGTCCCCAGCCCCCAGGCCCCAGCCATGG
ACCCTCATCCTCTTCATCTCCCAGATACGCACTGATGGTCTGGAAGGAACCTATAATCAA
GCAACGCAGCCCCTCATCCCAGACAGCAGAGTATCCCAAATGCATTCTATGGCTGGCAAG
TAAATAGGGTCATTCTTGTAAAGCAAGGACATCATATTTGTTTTAGAAATTATAAGCACA
TAATTTTAGCTTCTATTTTCTCTGTATTCAACCAAATTTTGGCATAAAATTGTATTACAG
ATGCATTTCATCCTAACTTAAATGGGTATGTTTTCATGTTTTATTTATAATGCTGAAATT
ATCCCAGATAAGTATCGTTAAACAATTTGTTTTGATTATAAGACACTTGACATTGTTTTT
AAAAAATCTTCTCATATGGGAAAAATATATCAAGATTAATGTATCAAAATTTATTGCATA
CTTTATTAAAATATAAAATCATTTTAAAACTCTTGATGCCACAAATAAAGTTCTATTCTA
GTAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGGGTGAGAGTTAGCAGCTTCAAAGATATCTAGCTGAATCTTCACCCTCAAGAAGCTTG
GAGATATGCAAAGGAATTTTCAAACAATCAAAAGTCAGGGTGAGCAGGATAAGGCAAAAG
GGAAAGTGTTCCATGCACCTGCAAAGATAAAGTGTGCCAAGACTGTATTTATATGTTTTA
TACCTATATTGGAATGATTATATAGAAAATGCTCTTGCAAAAAGTTAAAGCTATTTCTCA
ATATGGTATCTTGGTGATTTAGGAATAATTGTAAATATATGTTATGAATCTTCTTAAATA
CATATATATACATATATGTGTGTGACACACACACACACACATATATACTCAGAGTTGTAA
AAAGTGCATCTGGCTATTGGTTCAAGTTTGTTCTAACACAATGAGTACCTTTGAGCACAT
GTGACAGAAGCAAAACCACTTTCCAAACATGGCATCAGCAGCTCAGCTTAGGGAGAGTAA
TTCACAGATCAGTGCACCCTGTATCTTATCTTCACCTGTGCTAACCAGCTTTTAGGGGAG
ACCACCAGATGTAGCCCTAACTTTATCACTTAGTAAATATTTAAACTGAAGCCATGTACT
CAACGTCTCTGGGCTCTTGGTTCTTCACCTGTCAAAGGAAAATAATCATGGCTGCTGTCA
TTGTCATGTAAGATTGTTGTAAACTCCAGAGAGATGCTTTGCAAAGTATCATACAATTGA
AAGGTGCTTTGTGCTGACCATCAGATTTTGTCAAATCAGGTGTGAACATGAACTACACTC
CCAAAGAAAAGTCTCTTCATTTAAAAATAAAATGACTGCGATCAGGCAAGGAAGTAGGAA
CATCTGATATTGAATACGTGCAGATATATGTAATCATGTGTTTATCTGTACATGGACCTT
ACCATACAAATTCATTTTCTCCACATGAGCAAAGTAATACTGATACGGGCCAATGCATTT
TGGAATGTTCTTATTATGTAGAACTGAATGTGAAAACTATTTTTGTTAAAACAGGATTTT
ACCACATGATTGTTTAAGTATCACTTCTGTGAAATATAGCAGAAATCGGAGCTTGAGAAA
GTATAAAGCTTGCTTTTCATCTGACTCATTCACTTGGATGATTCTGTGACTCAGATAAAA
CAGGGTGTTAATGAGACCAGACACTTCCCCCGGTCCCCAGCCCCCAGGCCCCAGCCATGG
ACCCTCATCCTCTTCATCTCCCAGATACGCACTGATGGTCTGGAAGGAACCTATAATCAA
GCAACGCAGCCCCTCATCCCAGACAGCAGAGTATCCCAAATGCATTCTATGGCTGGCAAG
TAAATAGGGTCATTCTTGTAAAGCAAGGACATCATATTTGTTTTAGAAATTATAAGCACA
TAATTTTAGCTTCTATTTTCTCTGTATTCAACCAAATTTTGGCATAAAATTGTATTACAG
ATGCATTTCATCCTAACTTAAATGGGTATGTTTTCATGTTTTATTTATAATGCTGAAATT
ATCCCAGATAAGTATCGTTAAACAATTTGTTTTGATTATAAGACACTTGACATTGTTTTT
AAAAAATCTTCTCATATGGGAAAAATATATCAAGATTAATGTATCAAAATTTATTGCATA
CTTTATTAAAATATAAAATCATTTTAAAACTCTTGATGCCACAAATAAAGTTCTATTCTA
GTAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1077-1188, - strand, RNAz p=0.895732

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1077-1188, - strand, RNAz p=0.895732

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               2-312, gnl|bosTau2|chr10 (39164121-39163815)
               

               
               2-312, gnl|Hg17|chr15 (53908107-53907780)
               

               
               2-312, gnl|Mm7|chr9 (72781013-72781305)
               


               
               331-1692, gnl|bosTau2|chr10 (39163827-39162468)
               

               
               331-1692, gnl|Hg17|chr15 (53907792-53906408)
               

               
               331-1692, gnl|Mm7|chr9 (72781293-72782475)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-312, gnl|bosTau2|chr10 (39164121-39163815)
               

               
               2-312, gnl|Hg17|chr15 (53908107-53907780)
               

               
               2-312, gnl|Mm7|chr9 (72781013-72781305)
               


               
               331-1692, gnl|bosTau2|chr10 (39163827-39162468)
               

               
               331-1692, gnl|Hg17|chr15 (53907792-53906408)
               

               
               331-1692, gnl|Mm7|chr9 (72781293-72782475)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               liv (0.438853)
               

               
               sme (0.305437)
               

               
               lin (0.291206)
               

               
               ova (0.258264)
               

               
               thg (0.253582)
               

               
               cbe (0.239234)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               fhi (0.169578)
               

               
               bfe (0.149858)
               

               
               spl (0.143184)
               

               
               ste (0.135208)
               

               
               pla (0.133672)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.438853)
               

               
               sme (0.305437)
               

               
               lin (0.291206)
               

               
               ova (0.258264)
               

               
               thg (0.253582)
               

               
               cbe (0.239234)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               fhi (0.169578)
               

               
               bfe (0.149858)
               

               
               spl (0.143184)
               

               
               ste (0.135208)
               

               
               pla (0.133672)

	2-312, gnl\|bosTau2\|chr10 (39164121-39163815)
	2-312, gnl\|Hg17\|chr15 (53908107-53907780)
	2-312, gnl\|Mm7\|chr9 (72781013-72781305)

	331-1692, gnl\|bosTau2\|chr10 (39163827-39162468)
	331-1692, gnl\|Hg17\|chr15 (53907792-53906408)
	331-1692, gnl\|Mm7\|chr9 (72781293-72782475)

	liv (0.438853)
	sme (0.305437)
	lin (0.291206)
	ova (0.258264)
	thg (0.253582)
	cbe (0.239234)
	cmu (0.186393)
	sag (0.182715)
	fhi (0.169578)
	bfe (0.149858)
	spl (0.143184)
	ste (0.135208)
	pla (0.133672)