Non-Coding RNA Search

Ss1.1-rpbfe0136_j7.5

Sequence:


               
               TGGGAGTGGTTCTAGGGATTGAATCCAGTGATCTTCCTCTTCTGGCCGCTGTAGCAAGCA
CTCACTCTCCATATGTTGCTCAGATACTACTTTAACATCAAAGCTGTTAGAAATTAATTT
TGGTGGAAGATTGAGTATAATAAACCAAGGAAGCAATCACAACATGCATTTATAGCAATT
TTTTTTCTGTTAGACTTCCATCTGAATGAGTCAGGCACCTGGGTTTTCTGCATGGCAGTG
CATATTGTGTGATCATTGGATGGCTTTTTCCTTCTGATTGGACTTTTGGGTGGTGGTAGA
TTTTTAACCACGTGAAACTAAGAACAGCACAAATAATTTGGGGGAAAAGCATTTGAAGAA
GCCAAAGTGTAACTTCTAAGTTTCTACTACGTTAATAACAGTGAGAAATTTCCTCATGAT
CACTACAGTGTTGCCGCAGCTCATAAGTAGCAACAGATATTTCATGATTAAAATGGCTCA
GAAATAGTCATTTCCTTTGTTTTAATCCTTTATTTCTAAGGTACAGAGATCTATAAAACC
TTGATTTTATTTGTTTTTCAGTTCACAATAGCTAATTTCTAGGTATTTCTCCAAGTATTT
TAAACAGCTTGTTAATTATAATAAACTTGGAATATTGCATTTGAATCTATGTTATGTTAT
TCACCAAGTGTACATATGTATCTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGGAGTGGTTCTAGGGATTGAATCCAGTGATCTTCCTCTTCTGGCCGCTGTAGCAAGCA
CTCACTCTCCATATGTTGCTCAGATACTACTTTAACATCAAAGCTGTTAGAAATTAATTT
TGGTGGAAGATTGAGTATAATAAACCAAGGAAGCAATCACAACATGCATTTATAGCAATT
TTTTTTCTGTTAGACTTCCATCTGAATGAGTCAGGCACCTGGGTTTTCTGCATGGCAGTG
CATATTGTGTGATCATTGGATGGCTTTTTCCTTCTGATTGGACTTTTGGGTGGTGGTAGA
TTTTTAACCACGTGAAACTAAGAACAGCACAAATAATTTGGGGGAAAAGCATTTGAAGAA
GCCAAAGTGTAACTTCTAAGTTTCTACTACGTTAATAACAGTGAGAAATTTCCTCATGAT
CACTACAGTGTTGCCGCAGCTCATAAGTAGCAACAGATATTTCATGATTAAAATGGCTCA
GAAATAGTCATTTCCTTTGTTTTAATCCTTTATTTCTAAGGTACAGAGATCTATAAAACC
TTGATTTTATTTGTTTTTCAGTTCACAATAGCTAATTTCTAGGTATTTCTCCAAGTATTT
TAAACAGCTTGTTAATTATAATAAACTTGGAATATTGCATTTGAATCTATGTTATGTTAT
TCACCAAGTGTACATATGTATCTA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               16-684, gnl|bosTau2|chr7 (18890442-18889783)
               

               
               16-684, gnl|Hg17|chr5 (131008356-131007699)
               

               
               16-684, gnl|Mm7|chr11 (54472254-54472900)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               16-684, gnl|bosTau2|chr7 (18890442-18889783)
               

               
               16-684, gnl|Hg17|chr5 (131008356-131007699)
               

               
               16-684, gnl|Mm7|chr11 (54472254-54472900)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               cte (0.29274)
               

               
               cbl (0.229595)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)
               

               
               cbl (0.229595)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)

	16-684, gnl\|bosTau2\|chr7 (18890442-18889783)
	16-684, gnl\|Hg17\|chr5 (131008356-131007699)
	16-684, gnl\|Mm7\|chr11 (54472254-54472900)