Non-Coding RNA Search

Ss1.1-rpbfe0137_d18.5

Sequence:


               
               TTGAATTATAAAATAGTATTGGATGTTTTTTATACTGGTAGAAAAAAGCAAAAAGAATAT
ATGAGGAATAAAGTGATTTAAATTCACCTTGCAAGTTGGAAATCCCAGCTAATGGGAAGG
AATGTAAAATCAGAGTTTTTGAGTGCAAAGGTATATATTAAGCTTCAGGATTTTTGAATT
TTTACATCAGTTTATATTTTAATTCATTCTGTACCTGGCATGCGCAATAAAGCAGCACGT
GTGAAAAAATACACAGTGCAAGGACTTTATTATAAAGATTGGATGTAGTAGTCGTTAGAA
ATTTAGATGGACGATTTTGGCCCTCTTTATTGGATAAATGGGGCCAAGAAAGGCAGGGTA
GATTTTGAAGCACTGGTTTTGTTGAAGTTAAGTTTATTAAGGCTGGGAACATGAAAAGCT
AATTTATAAAAGCAATACTTTTTAATATGAAAATGCAAATTTTGTTTATACTTTTGCCTA
AAAATAAGAAACCAGATAATTGAGCATTAAAGTCATAGAAAACATGAGAGGGATAAGTTT
ATACAGCATTTTGTTCTGATGGTTCAACCAGAGAAAGGAGGCAAAAAGAAAAAATCACTG
TTTGGCCAAACAGAACAAGCTGCAGAAGAGAAAAAGTAAGCAAACAGAAGTCTGGCGTGT
TTTAGTCACACTAGCTTTTTAGTACTAACCATAGTTCTCACCCTCTTCAATGGTACCTCA
AGTTGCTGGAGCCTATCTGCCATGGTTCTGCTTCTACAGATTTCCTTTGTAAAGTGACTC
AAAGCTAATCGGGATAGCTTAAAAAAAAAGTGTATGCCTTCTCCATGGGAATTTATACTT
AAGTAGTTAAGGGCTTTTGATATTAAAGGTATTCTGAAGCTCTGAAATGCTAGAAAAAAC
TTGGAATGGGGTATATGCTAAAAAAGAGGATTCTGAAAGAAATAAAGGATGGTTAGTTTA
ATCAGTGATTCTTTTTAAACTATTCAAATATCATGAACAAGATACTAAATTGTACCTAAG
GATTTGTATTTCTTCAAATCTTGTTCTAAATGATATGTTTAATAAATGACTAGTTGATAT
TTGTGCATGTTATTTAATAAAGAGTTATATTTTTATAGAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGAATTATAAAATAGTATTGGATGTTTTTTATACTGGTAGAAAAAAGCAAAAAGAATAT
ATGAGGAATAAAGTGATTTAAATTCACCTTGCAAGTTGGAAATCCCAGCTAATGGGAAGG
AATGTAAAATCAGAGTTTTTGAGTGCAAAGGTATATATTAAGCTTCAGGATTTTTGAATT
TTTACATCAGTTTATATTTTAATTCATTCTGTACCTGGCATGCGCAATAAAGCAGCACGT
GTGAAAAAATACACAGTGCAAGGACTTTATTATAAAGATTGGATGTAGTAGTCGTTAGAA
ATTTAGATGGACGATTTTGGCCCTCTTTATTGGATAAATGGGGCCAAGAAAGGCAGGGTA
GATTTTGAAGCACTGGTTTTGTTGAAGTTAAGTTTATTAAGGCTGGGAACATGAAAAGCT
AATTTATAAAAGCAATACTTTTTAATATGAAAATGCAAATTTTGTTTATACTTTTGCCTA
AAAATAAGAAACCAGATAATTGAGCATTAAAGTCATAGAAAACATGAGAGGGATAAGTTT
ATACAGCATTTTGTTCTGATGGTTCAACCAGAGAAAGGAGGCAAAAAGAAAAAATCACTG
TTTGGCCAAACAGAACAAGCTGCAGAAGAGAAAAAGTAAGCAAACAGAAGTCTGGCGTGT
TTTAGTCACACTAGCTTTTTAGTACTAACCATAGTTCTCACCCTCTTCAATGGTACCTCA
AGTTGCTGGAGCCTATCTGCCATGGTTCTGCTTCTACAGATTTCCTTTGTAAAGTGACTC
AAAGCTAATCGGGATAGCTTAAAAAAAAAGTGTATGCCTTCTCCATGGGAATTTATACTT
AAGTAGTTAAGGGCTTTTGATATTAAAGGTATTCTGAAGCTCTGAAATGCTAGAAAAAAC
TTGGAATGGGGTATATGCTAAAAAAGAGGATTCTGAAAGAAATAAAGGATGGTTAGTTTA
ATCAGTGATTCTTTTTAAACTATTCAAATATCATGAACAAGATACTAAATTGTACCTAAG
GATTTGTATTTCTTCAAATCTTGTTCTAAATGATATGTTTAATAAATGACTAGTTGATAT
TTGTGCATGTTATTTAATAAAGAGTTATATTTTTATAGAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               13-1127, gnl|bosTau2|chr24 (28986931-28988063)
               

               
               13-1127, gnl|Hg17|chr18 (9272647-9273764)
               

               
               13-1127, gnl|Mm7|chr17 (64186186-64185024)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               13-1127, gnl|bosTau2|chr24 (28986931-28988063)
               

               
               13-1127, gnl|Hg17|chr18 (9272647-9273764)
               

               
               13-1127, gnl|Mm7|chr17 (64186186-64185024)

Expressed library(ies): 19 entry(ies)

More info

Expressed library(ies): 19 entry(ies)

Help | Less info


               
               pro (0.512033)
               

               
               cbl (0.45919)
               

               
               ret (0.3862)
               

               
               gul (0.355177)
               

               
               lnt (0.284616)
               

               
               sug (0.254582)
               

               
               tra (0.246184)
               

               
               mgp (0.230681)
               

               
               spc (0.226732)
               

               
               nlu (0.191681)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               fco (0.157208)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               thg (0.126791)
               

               
               jca (0.11396)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               cbl (0.45919)
               

               
               ret (0.3862)
               

               
               gul (0.355177)
               

               
               lnt (0.284616)
               

               
               sug (0.254582)
               

               
               tra (0.246184)
               

               
               mgp (0.230681)
               

               
               spc (0.226732)
               

               
               nlu (0.191681)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               fco (0.157208)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               thg (0.126791)
               

               
               jca (0.11396)

	13-1127, gnl\|bosTau2\|chr24 (28986931-28988063)
	13-1127, gnl\|Hg17\|chr18 (9272647-9273764)
	13-1127, gnl\|Mm7\|chr17 (64186186-64185024)

	pro (0.512033)
	cbl (0.45919)
	ret (0.3862)
	gul (0.355177)
	lnt (0.284616)
	sug (0.254582)
	tra (0.246184)
	mgp (0.230681)
	spc (0.226732)
	nlu (0.191681)
	sin (0.174948)
	rec (0.17307)
	fhi (0.169578)
	fco (0.157208)
	bfe (0.149858)
	fat (0.147427)
	ski (0.146735)
	thg (0.126791)
	jca (0.11396)