Non-Coding RNA Search

Ss1.1-rpfco0102_h17.5

Sequence:


               
               TCTGAAGTGTCACATTCAATATCAATTAAAAAAAAAAAAACCATGATTCTAGTTAAGTGT
AGAAGAGAGAAAGAAAAAAGTGTTCACTTTTTTAATACACTGATTTAGAAATTTGATGTC
TTATATCAATAGTTCTGAAGTATTAAATAGCATTCTTTATTTCTGCCTTTACGTTGACAG
TGTTGAAGCAGGGTGAATAACTAGGGCATATATTTTTTTTTTTTTTCCTAGTAAGCTGTT
TCATGATGTTTTCTTTGGAGTTTCTGAATAAGTTCAGGAAAACATTCTGCATGTTGTATC
TAGTCTGGTGTACTTAGCCATCTCATAAAAAAAACAAAAACACACAGACTGCATTTTGTA
GCTCTGTAATTCCTAAATACAGAAGTAATTTTCTTCTTTCCTGACTTTGACATCGTAGTT
ATAATGTTCTAATTTTGATTTTTACAAATCCTTTGGGTCTAATTCTGTGAGCCTACCTAT
AGCACTGGATTAAAATGTCTACATCATTTCTTTAGTTATCCAGTTAACTTTAAAACTGTT
GTAAAAGTGTAAACCAGCCCATGACAGTTTTTTGTACATGTTAAAGAACTTTATCATTCA
GTTTTCATGATTATTGTGTAAGGAAGACTGATATTAGATGTTCTATGCTGTCCTGGACCA
TGTTAATTACACTTATGATGTATTTTGGTTCCACATCACAATGATTTGTCCCCAATGACC
CTTTTATCCTTTCTAGGCACATTTTTTGTTGTTGTTGTTGTTGCAGTTTCCCTTTGCATT
GTATTGCTTTGACAACTGTAATTTGAATCAGATCTGAAAGAGGTCCAGAATAAAATATAT
TTTGATATTAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTGAAGTGTCACATTCAATATCAATTAAAAAAAAAAAAACCATGATTCTAGTTAAGTGT
AGAAGAGAGAAAGAAAAAAGTGTTCACTTTTTTAATACACTGATTTAGAAATTTGATGTC
TTATATCAATAGTTCTGAAGTATTAAATAGCATTCTTTATTTCTGCCTTTACGTTGACAG
TGTTGAAGCAGGGTGAATAACTAGGGCATATATTTTTTTTTTTTTTCCTAGTAAGCTGTT
TCATGATGTTTTCTTTGGAGTTTCTGAATAAGTTCAGGAAAACATTCTGCATGTTGTATC
TAGTCTGGTGTACTTAGCCATCTCATAAAAAAAACAAAAACACACAGACTGCATTTTGTA
GCTCTGTAATTCCTAAATACAGAAGTAATTTTCTTCTTTCCTGACTTTGACATCGTAGTT
ATAATGTTCTAATTTTGATTTTTACAAATCCTTTGGGTCTAATTCTGTGAGCCTACCTAT
AGCACTGGATTAAAATGTCTACATCATTTCTTTAGTTATCCAGTTAACTTTAAAACTGTT
GTAAAAGTGTAAACCAGCCCATGACAGTTTTTTGTACATGTTAAAGAACTTTATCATTCA
GTTTTCATGATTATTGTGTAAGGAAGACTGATATTAGATGTTCTATGCTGTCCTGGACCA
TGTTAATTACACTTATGATGTATTTTGGTTCCACATCACAATGATTTGTCCCCAATGACC
CTTTTATCCTTTCTAGGCACATTTTTTGTTGTTGTTGTTGTTGCAGTTTCCCTTTGCATT
GTATTGCTTTGACAACTGTAATTTGAATCAGATCTGAAAGAGGTCCAGAATAAAATATAT
TTTGATATTAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               263-382, - strand, RNAz p=0.76585
               

               
               617-752, - strand, RNAz p=0.958109

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               263-382, - strand, RNAz p=0.76585
               

               
               617-752, - strand, RNAz p=0.958109

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-850, gnl|bosTau2|chr1 (60320624-60319776)
               

               
               1-850, gnl|Hg17|chr3 (178222082-178221244)
               

               
               1-850, gnl|Mm7|chr3 (21953691-21954550)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-850, gnl|bosTau2|chr1 (60320624-60319776)
               

               
               1-850, gnl|Hg17|chr3 (178222082-178221244)
               

               
               1-850, gnl|Mm7|chr3 (21953691-21954550)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               tra (0.369276)
               

               
               nbm (0.297974)
               

               
               fce (0.271592)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               ova (0.129132)
               

               
               eje (0.0988338)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tra (0.369276)
               

               
               nbm (0.297974)
               

               
               fce (0.271592)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               ova (0.129132)
               

               
               eje (0.0988338)

	263-382, - strand, RNAz p=0.76585
	617-752, - strand, RNAz p=0.958109

	1-850, gnl\|bosTau2\|chr1 (60320624-60319776)
	1-850, gnl\|Hg17\|chr3 (178222082-178221244)
	1-850, gnl\|Mm7\|chr3 (21953691-21954550)

	tra (0.369276)
	nbm (0.297974)
	fce (0.271592)
	mga (0.160205)
	fco (0.157208)
	lin (0.145603)
	hyp (0.142837)
	pty (0.142714)
	ova (0.129132)
	eje (0.0988338)