Non-Coding RNA Search

Ss1.1-rpfco0102_k14.5

Sequence:


               
               GTCATTTAGAGGAGAAGCCCTATGAATGTAATGAATGTGGCAAGACCTTCAATCTAAATT
CGGCCTTCATTAGACATCGGAAAGTTCACACAGATGAGAAACCCCACGAATGTAGTGAGT
GTGGAAAGTTGTCATATCTCACTGACCATCACACAGCCCATTTAGGAGAGAAACCCTATG
AATGTAGTGAGTGTGGAAAAACCTTCCTTGAAAATTCAGCCTTCAGTGGGCTCCAGTCAC
TTCCCAAAGGAGAGAAATCCTATGAGTGTAATATATGTGGAAAATTGTTTTCTGAGTTGT
CGTACTATACAATACATTATAGGAGTCATTCAGAAGAGAAGCCCTATGGATGTAATGAAT
GTGGGAAAACCTTCTCCCACAACTCATCCCTCTTTAGACATCAAAGAGTACACACAGGAG
AGAAACCCTACGAGTGTTATGAATGTGGGAAGTTTTTCTCTCAGAAGTCTTATCTCACTA
TACATCATAGAATTCATTCAGGAGAGAAGCCCTACGAGTGCAGTAAGTGTGGAAAAGTTT
TTCTCTCGGATGTCAAACCTCACCGTACACTATAGAAGCCATTCAGGAGAGAAGCCCTAT
GAATGTAACGAATGTGGGAAAGTCTTTTCTCAGAAGTCATACCTCACTGTACATTATAGG
ACTCATTCAGGAGAGAAGCCCTATGAATGTAATGAATGTGGGAAAAAATTCCACCACAGA
TCAGCTTTCAATAGCCATCAAAGAATTCACAGGAGAGGGAATATGAACGTACTTGACGTG
GGAAGTCTTCTCTGACGTCAAATCTCATTTTAGAAAACCCTCTGCACATAATGAGTATGG
GAAATCCAGTTGGGAGTCACATATCACTGAGAGTTCATGTGAGGCAAAGCATTTAGGCAT
TAGATTGAGTTTAATCTGATTTTTCACAGAGGAGTATCCCTAAAAGTGCAGCAAGAAGCA
AAGCCTTTAGGAAGACCCTACAACTTGTTGGACACTAGACAATTTATACAAGAGTGAAAC
TATATAAATATTTAATATTTATTTTGGATTCCAATTATATTTACATATCAGGGAATCATG
CCAAGTCAAAATCTATCAAGGTGATGAATGTGGAAACATGTTTTGAAAATTATTATACCA
AAAGCCATATTTCTGATATAAAATCAAATGTTTATAAGAAAGGTATCAGAAGCTGTTAGC
TCCGAAATAAACCCTCATTGCAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCATTTAGAGGAGAAGCCCTATGAATGTAATGAATGTGGCAAGACCTTCAATCTAAATT
CGGCCTTCATTAGACATCGGAAAGTTCACACAGATGAGAAACCCCACGAATGTAGTGAGT
GTGGAAAGTTGTCATATCTCACTGACCATCACACAGCCCATTTAGGAGAGAAACCCTATG
AATGTAGTGAGTGTGGAAAAACCTTCCTTGAAAATTCAGCCTTCAGTGGGCTCCAGTCAC
TTCCCAAAGGAGAGAAATCCTATGAGTGTAATATATGTGGAAAATTGTTTTCTGAGTTGT
CGTACTATACAATACATTATAGGAGTCATTCAGAAGAGAAGCCCTATGGATGTAATGAAT
GTGGGAAAACCTTCTCCCACAACTCATCCCTCTTTAGACATCAAAGAGTACACACAGGAG
AGAAACCCTACGAGTGTTATGAATGTGGGAAGTTTTTCTCTCAGAAGTCTTATCTCACTA
TACATCATAGAATTCATTCAGGAGAGAAGCCCTACGAGTGCAGTAAGTGTGGAAAAGTTT
TTCTCTCGGATGTCAAACCTCACCGTACACTATAGAAGCCATTCAGGAGAGAAGCCCTAT
GAATGTAACGAATGTGGGAAAGTCTTTTCTCAGAAGTCATACCTCACTGTACATTATAGG
ACTCATTCAGGAGAGAAGCCCTATGAATGTAATGAATGTGGGAAAAAATTCCACCACAGA
TCAGCTTTCAATAGCCATCAAAGAATTCACAGGAGAGGGAATATGAACGTACTTGACGTG
GGAAGTCTTCTCTGACGTCAAATCTCATTTTAGAAAACCCTCTGCACATAATGAGTATGG
GAAATCCAGTTGGGAGTCACATATCACTGAGAGTTCATGTGAGGCAAAGCATTTAGGCAT
TAGATTGAGTTTAATCTGATTTTTCACAGAGGAGTATCCCTAAAAGTGCAGCAAGAAGCA
AAGCCTTTAGGAAGACCCTACAACTTGTTGGACACTAGACAATTTATACAAGAGTGAAAC
TATATAAATATTTAATATTTATTTTGGATTCCAATTATATTTACATATCAGGGAATCATG
CCAAGTCAAAATCTATCAAGGTGATGAATGTGGAAACATGTTTTGAAAATTATTATACCA
AAAGCCATATTTCTGATATAAAATCAAATGTTTATAAGAAAGGTATCAGAAGCTGTTAGC
TCCGAAATAAACCCTCATTGCAGA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               12-626, gnl|bosTau2|chr10 (9010490-9009865)
               

               
               12-626, gnl|Mm7|chr2 (127318492-127317867)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               12-626, gnl|bosTau2|chr10 (9010490-9009865)
               

               
               12-626, gnl|Mm7|chr2 (127318492-127317867)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

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               mcp (0.341297)
               

               
               isp (0.300752)
               

               
               fco (0.157208)
               

               
               liv (0.146284)
               

               
               hlv (0.139256)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.341297)
               

               
               isp (0.300752)
               

               
               fco (0.157208)
               

               
               liv (0.146284)
               

               
               hlv (0.139256)

	12-626, gnl\|bosTau2\|chr10 (9010490-9009865)
	12-626, gnl\|Mm7\|chr2 (127318492-127317867)

	mcp (0.341297)
	isp (0.300752)
	fco (0.157208)
	liv (0.146284)
	hlv (0.139256)