Non-Coding RNA Search

Ss1.1-rpfco0102_n13.5

Sequence:


               
               GAAGGGGCAGGTCACAATGATGTGGAACTTTATGGACAGTACCTTGAAAGATTGAAACAG
TTTGTGTCACAGGAACTGGTAAATTTGTAAAATATTCTGTAAATTTGCATACTGAGTTTT
CTTTTCTTGATGAACTGCACTCTTTGGTAAATAACATAAAACCTGAAGGTTTTGTTTGCA
AATCATGTAAGTTGCCTTCATAAATGTACAGGTAATGATTTGTTAACAGACTTAATGAAG
GTTTTAATTACCAAACTAGAAACTGGAAATAACAGTATCATACAGTCAGGCTGTGTAATT
TATATTTTTTCTGTGAATTTTTTTTTAAACATCAAGATGAGTACTGTATGAAATTTTAAT
TCTGTAAAATCAAATGCTGTAAAAGTATTGCCAAATGCTTTTGCATATTGGAAACAAATT
TATAAATATTTTTAAAACATCTCAATGTACTAAATCTTATCTGGTATACAAATGTAATAT
TCTGTCAATAAAAAGTGTATATCTAAAATAATTCAAGTACTCATAATAGAATAAACTGTA
TGAAAACATGGAAGTTCACTAGATATGACCTAAACCCTGTTGTACAGGGATAGAGATTTA
AAAGGTTATTTTATTGTAAAATACATTGAATTTTCTCTATTTCCTGGTTATCGTACATTC
TCTCCTTTAAAAAAAAAAAAAAGATGTAAGTCTTAATTTTCATGCCATCTGTTAATTTAC
CAACTAGTCACCTTGTAAATGAGAAGTCATGATAGCACTGAATTTTAACTAGTTTTGATT
TATAAGTTTTGGTACTGTGAGGCAACTACTTAAAATTTTCATTTTAGTAATTTAAAAGGC
ATTTAGAGCTTCAAGAATGATTTTGTATGTAATGTTGTTTTAAATTTTGACTAATCTCTT
AGAAATGCAGTACTGTCGTTATTAGAAAACCTGAAAGTCCATTAGATGTTCTTTAAGACC
ACAACAGACTGGCTATTTGTTCCCTTTTCACTTTGACTATTTTTAAGAACAGGATCTATT
GTTTTGGATTACTCTCTGAAAATTTCATGGATTCACTCCTGGATGCAGGAAATAAGAAAA
CATTTAATTACATAACTTTTATATTAACCAATGTAGTAAAAAATGAAGCTCACACCCAAA
AACTAAGTTGCCTTTCCTTGAATGAATCCTGCTTGAATAAAACAATGAAAGAAAAATAAA
ATTAAAATTAATGGTATGTAGTCTAATTTGTAAATGAATGAATATTGAAATAATACACAC
TGTGGATATATTTTTAAGGCCTTATGTAGTTTTAATTGTTCTGCTTGTTCTGTGGTTATG
TCTAAGACTATAGTATATGATTCTCTTCAAAGTATATCAAGTTATTGTGAATGCTTTGGT
TCAGATGTGTCAAATTAACAGTAAAACAAAAAATAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAGGGGCAGGTCACAATGATGTGGAACTTTATGGACAGTACCTTGAAAGATTGAAACAG
TTTGTGTCACAGGAACTGGTAAATTTGTAAAATATTCTGTAAATTTGCATACTGAGTTTT
CTTTTCTTGATGAACTGCACTCTTTGGTAAATAACATAAAACCTGAAGGTTTTGTTTGCA
AATCATGTAAGTTGCCTTCATAAATGTACAGGTAATGATTTGTTAACAGACTTAATGAAG
GTTTTAATTACCAAACTAGAAACTGGAAATAACAGTATCATACAGTCAGGCTGTGTAATT
TATATTTTTTCTGTGAATTTTTTTTTAAACATCAAGATGAGTACTGTATGAAATTTTAAT
TCTGTAAAATCAAATGCTGTAAAAGTATTGCCAAATGCTTTTGCATATTGGAAACAAATT
TATAAATATTTTTAAAACATCTCAATGTACTAAATCTTATCTGGTATACAAATGTAATAT
TCTGTCAATAAAAAGTGTATATCTAAAATAATTCAAGTACTCATAATAGAATAAACTGTA
TGAAAACATGGAAGTTCACTAGATATGACCTAAACCCTGTTGTACAGGGATAGAGATTTA
AAAGGTTATTTTATTGTAAAATACATTGAATTTTCTCTATTTCCTGGTTATCGTACATTC
TCTCCTTTAAAAAAAAAAAAAAGATGTAAGTCTTAATTTTCATGCCATCTGTTAATTTAC
CAACTAGTCACCTTGTAAATGAGAAGTCATGATAGCACTGAATTTTAACTAGTTTTGATT
TATAAGTTTTGGTACTGTGAGGCAACTACTTAAAATTTTCATTTTAGTAATTTAAAAGGC
ATTTAGAGCTTCAAGAATGATTTTGTATGTAATGTTGTTTTAAATTTTGACTAATCTCTT
AGAAATGCAGTACTGTCGTTATTAGAAAACCTGAAAGTCCATTAGATGTTCTTTAAGACC
ACAACAGACTGGCTATTTGTTCCCTTTTCACTTTGACTATTTTTAAGAACAGGATCTATT
GTTTTGGATTACTCTCTGAAAATTTCATGGATTCACTCCTGGATGCAGGAAATAAGAAAA
CATTTAATTACATAACTTTTATATTAACCAATGTAGTAAAAAATGAAGCTCACACCCAAA
AACTAAGTTGCCTTTCCTTGAATGAATCCTGCTTGAATAAAACAATGAAAGAAAAATAAA
ATTAAAATTAATGGTATGTAGTCTAATTTGTAAATGAATGAATATTGAAATAATACACAC
TGTGGATATATTTTTAAGGCCTTATGTAGTTTTAATTGTTCTGCTTGTTCTGTGGTTATG
TCTAAGACTATAGTATATGATTCTCTTCAAAGTATATCAAGTTATTGTGAATGCTTTGGT
TCAGATGTGTCAAATTAACAGTAAAACAAAAAATAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1009-1123, + strand, RNAz p=0.716062

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1009-1123, + strand, RNAz p=0.716062

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC044576, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC044576, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               978-1205, gnl|bosTau2|chr2 (51014555-51014771)
               

               
               978-1205, gnl|Hg17|chr9 (71710064-71709833)
               

               
               978-1205, gnl|Mm7|chr19 (21383320-21383556)
               


               
               1277-1393, gnl|bosTau2|chr2 (51015413-51015528)
               

               
               1277-1393, gnl|Hg17|chr9 (71709768-71709648)
               

               
               1277-1393, gnl|Mm7|chr19 (21383632-21383749)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               978-1205, gnl|bosTau2|chr2 (51014555-51014771)
               

               
               978-1205, gnl|Hg17|chr9 (71710064-71709833)
               

               
               978-1205, gnl|Mm7|chr19 (21383320-21383556)
               


               
               1277-1393, gnl|bosTau2|chr2 (51015413-51015528)
               

               
               1277-1393, gnl|Hg17|chr9 (71709768-71709648)
               

               
               1277-1393, gnl|Mm7|chr19 (21383632-21383749)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               ret (0.514933)
               

               
               fco (0.471624)
               

               
               lin (0.436808)
               

               
               amn (0.417711)
               

               
               kid (0.389206)
               

               
               cbe (0.239234)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               tbr (0.154178)
               

               
               bfe (0.149858)
               

               
               hyp (0.142837)
               

               
               tra (0.123092)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.514933)
               

               
               fco (0.471624)
               

               
               lin (0.436808)
               

               
               amn (0.417711)
               

               
               kid (0.389206)
               

               
               cbe (0.239234)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               tbr (0.154178)
               

               
               bfe (0.149858)
               

               
               hyp (0.142837)
               

               
               tra (0.123092)

	978-1205, gnl\|bosTau2\|chr2 (51014555-51014771)
	978-1205, gnl\|Hg17\|chr9 (71710064-71709833)
	978-1205, gnl\|Mm7\|chr19 (21383320-21383556)

	1277-1393, gnl\|bosTau2\|chr2 (51015413-51015528)
	1277-1393, gnl\|Hg17\|chr9 (71709768-71709648)
	1277-1393, gnl\|Mm7\|chr19 (21383632-21383749)

	ret (0.514933)
	fco (0.471624)
	lin (0.436808)
	amn (0.417711)
	kid (0.389206)
	cbe (0.239234)
	fbs (0.175346)
	sin (0.174948)
	tbr (0.154178)
	bfe (0.149858)
	hyp (0.142837)
	tra (0.123092)