Non-Coding RNA Search

Ss1.1-rpfco0103_b12.5

Sequence:


               
               GACTTACATAAGCTACCCTTCCGGTTCTTTAGGTTGACATGAAGTTTTAGGAAATGTAGG
CCCTAGAAAGAGGTTCTGGTTAGTTGTCTAAATATTTGCCAGGGAGCCAAGAAGTTCACC
ATGAAAAAAACAAAAAAACAAAAACAAGAGTTACAAAAGGGAAGGGTTAAGATGGGAAAG
CTAACAAACTAAAGTTTTGGCAAAAAGTAATATATGTAAATAGCTAATAATTTACTTTTG
TGCTTCCTTTAATCAGATTATTTCTATCAGCTATGGTGTTTTTCTAGCTCAGTGTACCTA
ATTTATTGAATGGGTGCTATCCTGTTTGTGTCCACCGTGGTTTTTCTTGGCTACAGAAAC
ACTCTGTTGCAGGCCAACACTAATTTTCATATTTGATTTACTCTCCAATGAGACTCGATG
GCTGGGCCGCTGTAGACTCATAGTTACTCTTGTTCTTTATCAAATTCATCTTGCTAATTA
GATTTCTAGTGACTGGTAACACATAGTTTACACAGAATTGCAATTATAGATGCATATAGC
TGCTGTACTAGAAAAAAATGGGTATTTCTGGTGTGCCAATAAATGATTTTTATGACAGAG
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACTTACATAAGCTACCCTTCCGGTTCTTTAGGTTGACATGAAGTTTTAGGAAATGTAGG
CCCTAGAAAGAGGTTCTGGTTAGTTGTCTAAATATTTGCCAGGGAGCCAAGAAGTTCACC
ATGAAAAAAACAAAAAAACAAAAACAAGAGTTACAAAAGGGAAGGGTTAAGATGGGAAAG
CTAACAAACTAAAGTTTTGGCAAAAAGTAATATATGTAAATAGCTAATAATTTACTTTTG
TGCTTCCTTTAATCAGATTATTTCTATCAGCTATGGTGTTTTTCTAGCTCAGTGTACCTA
ATTTATTGAATGGGTGCTATCCTGTTTGTGTCCACCGTGGTTTTTCTTGGCTACAGAAAC
ACTCTGTTGCAGGCCAACACTAATTTTCATATTTGATTTACTCTCCAATGAGACTCGATG
GCTGGGCCGCTGTAGACTCATAGTTACTCTTGTTCTTTATCAAATTCATCTTGCTAATTA
GATTTCTAGTGACTGGTAACACATAGTTTACACAGAATTGCAATTATAGATGCATATAGC
TGCTGTACTAGAAAAAAATGGGTATTTCTGGTGTGCCAATAAATGATTTTTATGACAGAG
AAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-599, gnl|bosTau2|chr10 (29386030-29385449)
               

               
               1-599, gnl|Hg17|chr14 (50512318-50511735)
               

               
               1-599, gnl|Mm7|chr12 (68186068-68185530)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-599, gnl|bosTau2|chr10 (29386030-29385449)
               

               
               1-599, gnl|Hg17|chr14 (50512318-50511735)
               

               
               1-599, gnl|Mm7|chr12 (68186068-68185530)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               cbe (0.717703)
               

               
               fcc (0.593354)
               

               
               fhi (0.508733)
               

               
               fbs (0.350693)
               

               
               fce (0.271592)
               

               
               fco (0.157208)
               

               
               hyp (0.142837)
               

               
               spc (0.113366)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.717703)
               

               
               fcc (0.593354)
               

               
               fhi (0.508733)
               

               
               fbs (0.350693)
               

               
               fce (0.271592)
               

               
               fco (0.157208)
               

               
               hyp (0.142837)
               

               
               spc (0.113366)

	1-599, gnl\|bosTau2\|chr10 (29386030-29385449)
	1-599, gnl\|Hg17\|chr14 (50512318-50511735)
	1-599, gnl\|Mm7\|chr12 (68186068-68185530)

	cbe (0.717703)
	fcc (0.593354)
	fhi (0.508733)
	fbs (0.350693)
	fce (0.271592)
	fco (0.157208)
	hyp (0.142837)
	spc (0.113366)