Non-Coding RNA Search

Ss1.1-rpfco0103_o10.5

Sequence:


               
               CAGCGAGCCCGCTGGCCGCCAGAACCTGTTTCTTGCCTCCCACCAGCAACCCCCACGCCA
CCCTGGGCCCAGGCACAAAGCATACGTCTCAGGGGACCACTCCCATGTTCCGGGAGTCCC
GAGGAAGCCTCCACGGCCTCTTGCACCTGCCCGTAGGGCGCTCCCCGGGCATCAGCCCCA
GAGAGGCTTGCAGTCCTGCCTTCCTCCCCGTTGGAAACTGCGGCCCCGCAAGCCACACGC
ACTCAGCATCGCATGCTGTGAGATTCCCAAGTGTGTGAAACTTCGTTTGGATTCCAACAC
ATGCAGCATGTGCAAAGGGACAGGCCCAGGCCACCACGGGTCGTCTGCCGGCTGGCCGCA
GAGCGTCCCGCCACGGCGGATCCTGGACCCTGAGCCTTGCATCTCCTGCACACCTGCAGA
GCCCCCCCCCCATCTCTCCTTCACACTGATTGCACACCGCCTTGCACAAGCAGAGATAAT
GTAACAATTACAACCATCTCTCATTTAAGGTAAACCCAAAGCCCCCGCTTGGACTTTCTT
GATTGTCTGAGAAGGGTTTGTGTGAACCCCTGTGTCCCTCCGTGTCCCGCCCGGGAGCAC
AGAGTGGGCCTGGGTGACACGTTCTCCCATCAGTAGACCTTGCTGAGAATGCTTCTTTAG
ACGCGGAAACCAGATGTCTGTTCCAGAAGGACACCAACTCAATATCACTGGGGAACCTCT
CGTGATAGATTTGTATAATCAATACGGGTCTATTTTTACGTCAACTGAACACTGTAGAGC
ACCTTCCAGTCTTTTCCAAGATTGTTAAATTGAGACAAGTAATTGAATAATTTGTCCTAT
TTTTATTTAAAAAGCAAAAACCAGTGAATGGACTGAAATGTTAAATGTGAATGTACATTT
CTTAATTGCAACTTTTCTACTGAGTGTTTGCACTATACTTTCTGGAATCTTATTTAACAA
AAATAAAGAAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCGAGCCCGCTGGCCGCCAGAACCTGTTTCTTGCCTCCCACCAGCAACCCCCACGCCA
CCCTGGGCCCAGGCACAAAGCATACGTCTCAGGGGACCACTCCCATGTTCCGGGAGTCCC
GAGGAAGCCTCCACGGCCTCTTGCACCTGCCCGTAGGGCGCTCCCCGGGCATCAGCCCCA
GAGAGGCTTGCAGTCCTGCCTTCCTCCCCGTTGGAAACTGCGGCCCCGCAAGCCACACGC
ACTCAGCATCGCATGCTGTGAGATTCCCAAGTGTGTGAAACTTCGTTTGGATTCCAACAC
ATGCAGCATGTGCAAAGGGACAGGCCCAGGCCACCACGGGTCGTCTGCCGGCTGGCCGCA
GAGCGTCCCGCCACGGCGGATCCTGGACCCTGAGCCTTGCATCTCCTGCACACCTGCAGA
GCCCCCCCCCCATCTCTCCTTCACACTGATTGCACACCGCCTTGCACAAGCAGAGATAAT
GTAACAATTACAACCATCTCTCATTTAAGGTAAACCCAAAGCCCCCGCTTGGACTTTCTT
GATTGTCTGAGAAGGGTTTGTGTGAACCCCTGTGTCCCTCCGTGTCCCGCCCGGGAGCAC
AGAGTGGGCCTGGGTGACACGTTCTCCCATCAGTAGACCTTGCTGAGAATGCTTCTTTAG
ACGCGGAAACCAGATGTCTGTTCCAGAAGGACACCAACTCAATATCACTGGGGAACCTCT
CGTGATAGATTTGTATAATCAATACGGGTCTATTTTTACGTCAACTGAACACTGTAGAGC
ACCTTCCAGTCTTTTCCAAGATTGTTAAATTGAGACAAGTAATTGAATAATTTGTCCTAT
TTTTATTTAAAAAGCAAAAACCAGTGAATGGACTGAAATGTTAAATGTGAATGTACATTT
CTTAATTGCAACTTTTCTACTGAGTGTTTGCACTATACTTTCTGGAATCTTATTTAACAA
AAATAAAGAAGA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               690-809, - strand, RNAz p=0.602267
               

               
               713-831, + strand, RNAz p=0.607936

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               690-809, - strand, RNAz p=0.602267
               

               
               713-831, + strand, RNAz p=0.607936

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_021116, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_021116, +

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-415, gnl|bosTau2|chr4 (43633975-43634396)
               

               
               1-415, gnl|Hg17|chr7 (45534876-45535320)
               

               
               1-415, gnl|Mm7|chr11 (7129442-7129895)
               


               
               498-968, gnl|bosTau2|chr4 (43634529-43634988)
               

               
               498-968, gnl|Hg17|chr7 (45535446-45535934)
               

               
               498-968, gnl|Mm7|chr11 (7130010-7130493)
               


               
               713-966, gnl|bosTau2|chr3 (55153599-55153346)
               

               
               713-966, gnl|Hg17|chr7 (45535687-45535932)
               

               
               713-966, gnl|Mm7|chr11 (7130255-7130491)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-415, gnl|bosTau2|chr4 (43633975-43634396)
               

               
               1-415, gnl|Hg17|chr7 (45534876-45535320)
               

               
               1-415, gnl|Mm7|chr11 (7129442-7129895)
               


               
               498-968, gnl|bosTau2|chr4 (43634529-43634988)
               

               
               498-968, gnl|Hg17|chr7 (45535446-45535934)
               

               
               498-968, gnl|Mm7|chr11 (7130010-7130493)
               


               
               713-966, gnl|bosTau2|chr3 (55153599-55153346)
               

               
               713-966, gnl|Hg17|chr7 (45535687-45535932)
               

               
               713-966, gnl|Mm7|chr11 (7130255-7130491)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               fco (0.471624)
               

               
               cbe (0.239234)
               

               
               ecc (0.23007)
               

               
               fcc (0.197785)
               

               
               fhi (0.169578)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.471624)
               

               
               cbe (0.239234)
               

               
               ecc (0.23007)
               

               
               fcc (0.197785)
               

               
               fhi (0.169578)

	690-809, - strand, RNAz p=0.602267
	713-831, + strand, RNAz p=0.607936

	1-415, gnl\|bosTau2\|chr4 (43633975-43634396)
	1-415, gnl\|Hg17\|chr7 (45534876-45535320)
	1-415, gnl\|Mm7\|chr11 (7129442-7129895)

	498-968, gnl\|bosTau2\|chr4 (43634529-43634988)
	498-968, gnl\|Hg17\|chr7 (45535446-45535934)
	498-968, gnl\|Mm7\|chr11 (7130010-7130493)

	713-966, gnl\|bosTau2\|chr3 (55153599-55153346)
	713-966, gnl\|Hg17\|chr7 (45535687-45535932)
	713-966, gnl\|Mm7\|chr11 (7130255-7130491)

	fco (0.471624)
	cbe (0.239234)
	ecc (0.23007)
	fcc (0.197785)
	fhi (0.169578)