Non-Coding RNA Search

Ss1.1-rpfco0104_c10.5

Sequence:


               
               CTTCTTTAGTAGAGCGACTTGTTTTTAAAAATAAACAGTATCACTTTTCTAAGAAAATAA
GAGCATTTTTTCCCTTGGTTGTTTTCCTCTTCTATTATATGTTAATGGGAAAAGCTACAG
AAAATTCAGTGTGGGTACTAATGAAGATACTAGTATAAATTTAAAGGAACATGTGACTGT
AAAAATTCACAAAGTGCTTAGTTTCTTCATAATTCATTCATTTGCATGTTTTAGAATAGG
TTTTAGGGGATATTTAATTCATTTTCTTTTTGGCATTTTTCTTTATTTTGGTTATCAACT
TCCCAGGACTTTGATAATACACAAATACAAATCCCAGGGGAAGTGTTGGGATGCTAGATG
AACAGGTGGGAATGTGCTGCTGTCCAGAGTGAGCCATGTTCCAGTGTTGAGAATTCAATG
CCTCAGTGTTTATTCAGTACCACCTCATGGAACTTCAGTGTAAACAGATATTATATGTAT
AATTGGTTATTTATATAGTTTTGTAGATCCATAGATAAAATGCCCTCATTCATTTTTATA
TGTAATTGTGTTTGGAGTATTTGTGTTTTATTCTTTGACTAAAGCAGGCTCTTGTATGTT
ATATCTTTGGTGATTTGAAGTATCAGGAAAGACAAATTTTCAGAAATGAGGAAAATGTAG
TTGAAATCTGCTTAGCCGAAATATTCCACAGCAAGACAATTTCTTTTGGGTGAACTGATT
CCGTAATGTAGTTACACTTGATGTAAGGATTAAGTTTATTGTGGAGCTGCTTTCCAGACT
GTCACTTTATAGTTTTTTCTACATAAAGATTATATAGTTGCAAACAAAGGTTGTGGAATT
TTGCTTTTATTGTTGTTTTTTGACTTTTAATTACTTTAATAAAAAACATTGTTTTCATAG
CAAACTTTTAGACTGTTCATGTAATTTTCTCCATATAGTTTTTTAATGAGTAAACCATAC
CTAGTTTTCAGCAGTTTTCTCCCAAGTGAAATAAGTGGTATGTCATATTTATCAGTTGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTCTTTAGTAGAGCGACTTGTTTTTAAAAATAAACAGTATCACTTTTCTAAGAAAATAA
GAGCATTTTTTCCCTTGGTTGTTTTCCTCTTCTATTATATGTTAATGGGAAAAGCTACAG
AAAATTCAGTGTGGGTACTAATGAAGATACTAGTATAAATTTAAAGGAACATGTGACTGT
AAAAATTCACAAAGTGCTTAGTTTCTTCATAATTCATTCATTTGCATGTTTTAGAATAGG
TTTTAGGGGATATTTAATTCATTTTCTTTTTGGCATTTTTCTTTATTTTGGTTATCAACT
TCCCAGGACTTTGATAATACACAAATACAAATCCCAGGGGAAGTGTTGGGATGCTAGATG
AACAGGTGGGAATGTGCTGCTGTCCAGAGTGAGCCATGTTCCAGTGTTGAGAATTCAATG
CCTCAGTGTTTATTCAGTACCACCTCATGGAACTTCAGTGTAAACAGATATTATATGTAT
AATTGGTTATTTATATAGTTTTGTAGATCCATAGATAAAATGCCCTCATTCATTTTTATA
TGTAATTGTGTTTGGAGTATTTGTGTTTTATTCTTTGACTAAAGCAGGCTCTTGTATGTT
ATATCTTTGGTGATTTGAAGTATCAGGAAAGACAAATTTTCAGAAATGAGGAAAATGTAG
TTGAAATCTGCTTAGCCGAAATATTCCACAGCAAGACAATTTCTTTTGGGTGAACTGATT
CCGTAATGTAGTTACACTTGATGTAAGGATTAAGTTTATTGTGGAGCTGCTTTCCAGACT
GTCACTTTATAGTTTTTTCTACATAAAGATTATATAGTTGCAAACAAAGGTTGTGGAATT
TTGCTTTTATTGTTGTTTTTTGACTTTTAATTACTTTAATAAAAAACATTGTTTTCATAG
CAAACTTTTAGACTGTTCATGTAATTTTCTCCATATAGTTTTTTAATGAGTAAACCATAC
CTAGTTTTCAGCAGTTTTCTCCCAAGTGAAATAAGTGGTATGTCATATTTATCAGTTGTA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               2-622, gnl|bosTau2|chr1 (84575483-84576093)
               

               
               2-622, gnl|Hg17|chr3 (144261184-144261808)
               

               
               2-622, gnl|Mm7|chr9 (95104176-95103605)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-622, gnl|bosTau2|chr1 (84575483-84576093)
               

               
               2-622, gnl|Hg17|chr3 (144261184-144261808)
               

               
               2-622, gnl|Mm7|chr9 (95104176-95103605)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

Help | Less info


               
               ret (0.514933)
               

               
               fco (0.471624)
               

               
               lin (0.291206)
               

               
               kid (0.259471)
               

               
               ece (0.229305)
               

               
               aor (0.195274)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               rec (0.17307)
               

               
               nbm (0.0993246)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.514933)
               

               
               fco (0.471624)
               

               
               lin (0.291206)
               

               
               kid (0.259471)
               

               
               ece (0.229305)
               

               
               aor (0.195274)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               rec (0.17307)
               

               
               nbm (0.0993246)

	2-622, gnl\|bosTau2\|chr1 (84575483-84576093)
	2-622, gnl\|Hg17\|chr3 (144261184-144261808)
	2-622, gnl\|Mm7\|chr9 (95104176-95103605)

	ret (0.514933)
	fco (0.471624)
	lin (0.291206)
	kid (0.259471)
	ece (0.229305)
	aor (0.195274)
	gul (0.177588)
	fty (0.17584)
	rec (0.17307)
	nbm (0.0993246)