Non-Coding RNA Search

Ss1.1-rpfco0104_e10.5.5

Sequence:


               
               GCCGCTAGTCGGAGAGAGTGGTTGCGGGGAGACCCGGGCCACTCCGCCAGCTATTACTGC
TACTGCCGCTGCCCCCCGCAGTCGCAGCCCAGCAGCCGGGAAACGCCACCCACAGATTGG
GCCGCGCAGCGTGGGAGGGGTAGCGGTCCCGGGGGACTGATTCTGAACTTGCAGGGGGAC
CGCGGCTCTCTGGGCCTGGAGAGTGTGAACAGAACTGCGGGTTTACAATGCTATGGTGAC
TCCAAAGGCCAAAACCAAAGAGATCTTCTCAGCTCTTTAGTTTGAACTACAGTGAATTGT
CTACCAACACCCGGCATGGCGAAAAGTGCAGAGGTCAAATTGGCAGTATTTGGGACAGCA
GGCGTGGGCAAGTCAGCTCTTGTAGTGCGATTTTTGACCAAACGGTTCATCTGGGAATAT
GATCCCACCCTCGAATCAACCTATCGACACCAAGCAACCATTGATGATGAAGTTGTCACC
ATGGAGATACTAGATACAGCTGGTCAGGAAGACACCATTCAGAGGGAAGGACACATGCGA
TGGGGGGAAGGCTTTGTGCTGGTCTATGACATTACTGACCGAGGAAGTTTTGAAGAAGTG
CTGCCACTTAAGAACATCCTAGATGAGATCAAAAAGCCCAAGAATGTGACTCTCATCTTG
GTTGGAAACAAGGCTGACTTGGACCACTCTAGACAGGTTAGTACAGAAGAAGGGGAGAAG
CTGGCCACAGAATTGGCATGTGCTTTTTATGAATGTTCTGCCTGCACCGGAGAAGGGAAC
ATCACAGAGATATTCTACGAGCTGTGTCGAGAGGTACGACGCCGGAAGATGGTCCAGGGC
AAGACAAGGCGACGCAGCTCCACCACACATGTCAAGCAAGCCATTAACAAGATGCTCACT
AAAATCAGCAGTTAGGCAGCTCTGTCCTTGTGAAGGTCCTGTTCAGGTGGGTCTGGTAAT
TGGAAACACTTTCTTGCCCTTTTGCCCTTTTTCACCCCCCAAATAAGAAAATATTCCATT
CCTTGTTGCGACTCTCAGAAATGTCTGGTCTCAGCCTCCCATATGTTGGGAAGTTAGAGA
GTGTTTCAATGCAGTTTCAGTGCTGACAATCTTTCTTATGCCTGCTTGAATAAAATATGC
TCTGTTGTAGCTTGAACATGTAATCACCAGATTCTGAAATGGCTGGGTTCATATTAAGCT
CTTCGTAGCCATCTCCACTTTGCTTCAATAGGTTGAAGTCTTTTCAGAGGCATTTTTAAA
TTCCCTTCTTTGTCATAGTCTACAAATGATCATTGCAAAAGTCCAAAATAATAGAGGATG
CAGTAAAAACACAGGAAGAGTAGCGGAGATGTTGGACTGGGGAATAGAGCCTTAGTTCCT
ATTTGAAGTGAGGATTTCCTGAACTATCTTAAATTATCTAGTTTTTCTTTAACCCTTGTT
TTGCTCTTAAATTCAAACACATCCTCAAAGTTTTACATTGTCCTAGAGAGTTTCATTTCA
ATATTTCTATGGTCTGTTGATCATTGTACCCTCATTCTCTATGGCTCCAGAAAGATTTAA
TTATATATAGCAAAGGCAGCAGGACCCTTCAATTCAAACCTTGCTGGGCCATTTCTCACC
AAGCCCAGGCTGATGTAAAGACAATAGGAATCTTTGCACCAAATGCTGATTTTATTGAAT
GCTAATAGAGGATTTAGAATCAGAAGTGTCTAGTTCATTTCTTTCTCTGATTATCATCTT
AGCAGAAAGACAACATTCCAAAAAACAGGTAAGTTAAGAGTAAAACTTAACTACCCTTCC
GTTGGGGAGTCCAGGCTCTGTGCCAGGCACAGTAAGAAGAATTAGCCACTGATTTGTTAA
GTTGGCAACATGACTTCTAATATTTTGGATAAATTAATTTGTTAGGAGGATTCAGAAAAG
AAGGAATGATTAAAGTTCACTATACCTGAATAAATGTGTATAAAACAGATTCCTATATTG
TGAAAGTACAGTCTATAACTAATAAAGCTTTATGATTCTTTTTTCCCTACTATGGCCCCA
TATATCAAAATTTGGGCACTTTATTTTAGAAAAAATATATATCTTTTACATATATGTGTA
TTTATAAATGCATAGATATATGTATAAAAATTTGTAAGAGTTGGAGGCTTTAATTCACCA
ATGCATTTGGACGACTCAGTGTAACTATTTTATGTGAATACAATAAAAAGCATAATTTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCGCTAGTCGGAGAGAGTGGTTGCGGGGAGACCCGGGCCACTCCGCCAGCTATTACTGC
TACTGCCGCTGCCCCCCGCAGTCGCAGCCCAGCAGCCGGGAAACGCCACCCACAGATTGG
GCCGCGCAGCGTGGGAGGGGTAGCGGTCCCGGGGGACTGATTCTGAACTTGCAGGGGGAC
CGCGGCTCTCTGGGCCTGGAGAGTGTGAACAGAACTGCGGGTTTACAATGCTATGGTGAC
TCCAAAGGCCAAAACCAAAGAGATCTTCTCAGCTCTTTAGTTTGAACTACAGTGAATTGT
CTACCAACACCCGGCATGGCGAAAAGTGCAGAGGTCAAATTGGCAGTATTTGGGACAGCA
GGCGTGGGCAAGTCAGCTCTTGTAGTGCGATTTTTGACCAAACGGTTCATCTGGGAATAT
GATCCCACCCTCGAATCAACCTATCGACACCAAGCAACCATTGATGATGAAGTTGTCACC
ATGGAGATACTAGATACAGCTGGTCAGGAAGACACCATTCAGAGGGAAGGACACATGCGA
TGGGGGGAAGGCTTTGTGCTGGTCTATGACATTACTGACCGAGGAAGTTTTGAAGAAGTG
CTGCCACTTAAGAACATCCTAGATGAGATCAAAAAGCCCAAGAATGTGACTCTCATCTTG
GTTGGAAACAAGGCTGACTTGGACCACTCTAGACAGGTTAGTACAGAAGAAGGGGAGAAG
CTGGCCACAGAATTGGCATGTGCTTTTTATGAATGTTCTGCCTGCACCGGAGAAGGGAAC
ATCACAGAGATATTCTACGAGCTGTGTCGAGAGGTACGACGCCGGAAGATGGTCCAGGGC
AAGACAAGGCGACGCAGCTCCACCACACATGTCAAGCAAGCCATTAACAAGATGCTCACT
AAAATCAGCAGTTAGGCAGCTCTGTCCTTGTGAAGGTCCTGTTCAGGTGGGTCTGGTAAT
TGGAAACACTTTCTTGCCCTTTTGCCCTTTTTCACCCCCCAAATAAGAAAATATTCCATT
CCTTGTTGCGACTCTCAGAAATGTCTGGTCTCAGCCTCCCATATGTTGGGAAGTTAGAGA
GTGTTTCAATGCAGTTTCAGTGCTGACAATCTTTCTTATGCCTGCTTGAATAAAATATGC
TCTGTTGTAGCTTGAACATGTAATCACCAGATTCTGAAATGGCTGGGTTCATATTAAGCT
CTTCGTAGCCATCTCCACTTTGCTTCAATAGGTTGAAGTCTTTTCAGAGGCATTTTTAAA
TTCCCTTCTTTGTCATAGTCTACAAATGATCATTGCAAAAGTCCAAAATAATAGAGGATG
CAGTAAAAACACAGGAAGAGTAGCGGAGATGTTGGACTGGGGAATAGAGCCTTAGTTCCT
ATTTGAAGTGAGGATTTCCTGAACTATCTTAAATTATCTAGTTTTTCTTTAACCCTTGTT
TTGCTCTTAAATTCAAACACATCCTCAAAGTTTTACATTGTCCTAGAGAGTTTCATTTCA
ATATTTCTATGGTCTGTTGATCATTGTACCCTCATTCTCTATGGCTCCAGAAAGATTTAA
TTATATATAGCAAAGGCAGCAGGACCCTTCAATTCAAACCTTGCTGGGCCATTTCTCACC
AAGCCCAGGCTGATGTAAAGACAATAGGAATCTTTGCACCAAATGCTGATTTTATTGAAT
GCTAATAGAGGATTTAGAATCAGAAGTGTCTAGTTCATTTCTTTCTCTGATTATCATCTT
AGCAGAAAGACAACATTCCAAAAAACAGGTAAGTTAAGAGTAAAACTTAACTACCCTTCC
GTTGGGGAGTCCAGGCTCTGTGCCAGGCACAGTAAGAAGAATTAGCCACTGATTTGTTAA
GTTGGCAACATGACTTCTAATATTTTGGATAAATTAATTTGTTAGGAGGATTCAGAAAAG
AAGGAATGATTAAAGTTCACTATACCTGAATAAATGTGTATAAAACAGATTCCTATATTG
TGAAAGTACAGTCTATAACTAATAAAGCTTTATGATTCTTTTTTCCCTACTATGGCCCCA
TATATCAAAATTTGGGCACTTTATTTTAGAAAAAATATATATCTTTTACATATATGTGTA
TTTATAAATGCATAGATATATGTATAAAAATTTGTAAGAGTTGGAGGCTTTAATTCACCA
ATGCATTTGGACGACTCAGTGTAACTATTTTATGTGAATACAATAAAAAGCATAATTTTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57106957|ref|XP_543792.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57106957|ref|XP_543792.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               584-703, + strand, RNAz p=0.897873

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               584-703, + strand, RNAz p=0.897873

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_032918, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_032918, +

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               211-376, gnl|bosTau2|chr5 (55294340-55294505)
               

               
               211-376, gnl|canFam2|chr27 (34436240-34435702)
               

               
               211-376, gnl|dasNov1|scaffold_23204 (6577-6066)
               

               
               211-376, gnl|echTel1|scaffold_279384 (4089-3423)
               

               
               211-376, gnl|hg17|chr12 (15261339-15261864)
               

               
               211-376, gnl|Hg17|chr12 (15261806-15261630)
               

               
               211-376, gnl|loxAfr1|scaffold_53141 (11318-11860)
               

               
               211-376, gnl|mm7|chr6 (137189358-137189809)
               

               
               211-376, gnl|Mm7|chr6 (137189768-137189599)
               

               
               211-376, gnl|monDom2|scaffold_31 (10742106-10741630)
               

               
               211-376, gnl|oryCun1|scaffold_107138 (10119-9630)
               

               
               211-376, gnl|panTro1|chrUn_random (41539027-41539554)
               

               
               211-376, gnl|rheMac2|chr11 (15604929-15605453)
               

               
               211-376, gnl|rn3|chr4 (174478432-174478888)
               


               
               505-1323, gnl|bosTau2|chr5 (55417558-55418382)
               

               
               505-1323, gnl|Hg17|chr12 (15153721-15152911)
               

               
               505-1323, gnl|Mm7|chr6 (137081207-137080415)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               211-376, gnl|bosTau2|chr5 (55294340-55294505)
               

               
               211-376, gnl|canFam2|chr27 (34436240-34435702)
               

               
               211-376, gnl|dasNov1|scaffold_23204 (6577-6066)
               

               
               211-376, gnl|echTel1|scaffold_279384 (4089-3423)
               

               
               211-376, gnl|hg17|chr12 (15261339-15261864)
               

               
               211-376, gnl|Hg17|chr12 (15261806-15261630)
               

               
               211-376, gnl|loxAfr1|scaffold_53141 (11318-11860)
               

               
               211-376, gnl|mm7|chr6 (137189358-137189809)
               

               
               211-376, gnl|Mm7|chr6 (137189768-137189599)
               

               
               211-376, gnl|monDom2|scaffold_31 (10742106-10741630)
               

               
               211-376, gnl|oryCun1|scaffold_107138 (10119-9630)
               

               
               211-376, gnl|panTro1|chrUn_random (41539027-41539554)
               

               
               211-376, gnl|rheMac2|chr11 (15604929-15605453)
               

               
               211-376, gnl|rn3|chr4 (174478432-174478888)
               


               
               505-1323, gnl|bosTau2|chr5 (55417558-55418382)
               

               
               505-1323, gnl|Hg17|chr12 (15153721-15152911)
               

               
               505-1323, gnl|Mm7|chr6 (137081207-137080415)

Expressed library(ies): 12 entry(ies)

More info

Expressed library(ies): 12 entry(ies)

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               sug (0.763747)
               

               
               bla (0.497389)
               

               
               fco (0.314416)
               

               
               liv (0.292569)
               

               
               cbe (0.239234)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               gul (0.177588)
               

               
               cut (0.169924)
               

               
               ssp (0.13552)
               

               
               kid (0.129735)
               

               
               ret (0.128733)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sug (0.763747)
               

               
               bla (0.497389)
               

               
               fco (0.314416)
               

               
               liv (0.292569)
               

               
               cbe (0.239234)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               gul (0.177588)
               

               
               cut (0.169924)
               

               
               ssp (0.13552)
               

               
               kid (0.129735)
               

               
               ret (0.128733)

	211-376, gnl\|bosTau2\|chr5 (55294340-55294505)
	211-376, gnl\|canFam2\|chr27 (34436240-34435702)
	211-376, gnl\|dasNov1\|scaffold_23204 (6577-6066)
	211-376, gnl\|echTel1\|scaffold_279384 (4089-3423)
	211-376, gnl\|hg17\|chr12 (15261339-15261864)
	211-376, gnl\|Hg17\|chr12 (15261806-15261630)
	211-376, gnl\|loxAfr1\|scaffold_53141 (11318-11860)
	211-376, gnl\|mm7\|chr6 (137189358-137189809)
	211-376, gnl\|Mm7\|chr6 (137189768-137189599)
	211-376, gnl\|monDom2\|scaffold_31 (10742106-10741630)
	211-376, gnl\|oryCun1\|scaffold_107138 (10119-9630)
	211-376, gnl\|panTro1\|chrUn_random (41539027-41539554)
	211-376, gnl\|rheMac2\|chr11 (15604929-15605453)
	211-376, gnl\|rn3\|chr4 (174478432-174478888)

	505-1323, gnl\|bosTau2\|chr5 (55417558-55418382)
	505-1323, gnl\|Hg17\|chr12 (15153721-15152911)
	505-1323, gnl\|Mm7\|chr6 (137081207-137080415)

	sug (0.763747)
	bla (0.497389)
	fco (0.314416)
	liv (0.292569)
	cbe (0.239234)
	aor (0.195274)
	col (0.195008)
	gul (0.177588)
	cut (0.169924)
	ssp (0.13552)
	kid (0.129735)
	ret (0.128733)