Non-Coding RNA Search

Ss1.1-rpfco0104_g11.5

Sequence:


               
               GCTCTGCATAAGTTCCTCCGCCTGCTGGTGGGGCCCTGACAGACTCACCGTCCTGTGCTC
CTGAGCGCCCCACACGGCTGCCCAGCCCCTGGCTGAGGACCGCGTCGCCAGACAGACACA
GACAGACTCAGAGAAGCATGACCAAGTCCACGTGGAAAATAAATCATATTTTTTGGGGAA
GTTACAGAAATGTAGAACACCTAAAATAATGCATCTAGTTTCCAAATAAGATGGAGTTTG
GACCATGCAGTATGCATGGGCTCAATGATTTCTCTATTTTAATGTATTTTTCTTTTCTAA
ACTTTTTCTCCAGGTCTTCATTTTGCACGAACTGTTGAGCAGTTATCTTTAGGATACCCT
GTAAAAATGTTGGGTCAAAGCCTTTCTGACAAAGCAAAATATTTTTAGTAGATGATTGCG
TTTAGGAAATTTTTTAATTTACTTTTTCCTTTGGGGGCTTTTCTTTTTTTATTAAAGTAA
ATTATTTCTTTTGAGACATTTTGATTAAAAAAGATACATCTTATCATAAGTAAAATTCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTCTGCATAAGTTCCTCCGCCTGCTGGTGGGGCCCTGACAGACTCACCGTCCTGTGCTC
CTGAGCGCCCCACACGGCTGCCCAGCCCCTGGCTGAGGACCGCGTCGCCAGACAGACACA
GACAGACTCAGAGAAGCATGACCAAGTCCACGTGGAAAATAAATCATATTTTTTGGGGAA
GTTACAGAAATGTAGAACACCTAAAATAATGCATCTAGTTTCCAAATAAGATGGAGTTTG
GACCATGCAGTATGCATGGGCTCAATGATTTCTCTATTTTAATGTATTTTTCTTTTCTAA
ACTTTTTCTCCAGGTCTTCATTTTGCACGAACTGTTGAGCAGTTATCTTTAGGATACCCT
GTAAAAATGTTGGGTCAAAGCCTTTCTGACAAAGCAAAATATTTTTAGTAGATGATTGCG
TTTAGGAAATTTTTTAATTTACTTTTTCCTTTGGGGGCTTTTCTTTTTTTATTAAAGTAA
ATTATTTCTTTTGAGACATTTTGATTAAAAAAGATACATCTTATCATAAGTAAAATTCAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               156-267, + strand, RNAz p=0.946968

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               156-267, + strand, RNAz p=0.946968

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               1-540, gnl|bosTau2|chr18 (54349091-54349631)
               

               
               1-540, gnl|canFam2|chr1 (124798924-124798250)
               

               
               1-540, gnl|echTel1|scaffold_246867 (2524-1847)
               

               
               1-540, gnl|galGal2|chr11 (8478997-8479653)
               

               
               1-540, gnl|hg17|chr19 (34746555-34747214)
               

               
               1-540, gnl|Hg17|chr19 (34746643-34747186)
               

               
               1-540, gnl|loxAfr1|scaffold_220290 (655-4)
               

               
               1-540, gnl|mm7|chr7 (37202807-37203426)
               

               
               1-540, gnl|Mm7|chr7 (37202893-37203398)
               

               
               1-540, gnl|monDom2|scaffold_35 (8226683-8225997)
               

               
               1-540, gnl|oryCun1|scaffold_173997 (52618-53236)
               

               
               1-540, gnl|panTro1|chr20_random (12911176-12910517)
               

               
               1-540, gnl|rheMac2|chr19 (36000637-36001292)
               

               
               1-540, gnl|rn3|chr1 (92543938-92544556)
               

               
               1-540, gnl|xenTro1|scaffold_391 (651800-651141)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-540, gnl|bosTau2|chr18 (54349091-54349631)
               

               
               1-540, gnl|canFam2|chr1 (124798924-124798250)
               

               
               1-540, gnl|echTel1|scaffold_246867 (2524-1847)
               

               
               1-540, gnl|galGal2|chr11 (8478997-8479653)
               

               
               1-540, gnl|hg17|chr19 (34746555-34747214)
               

               
               1-540, gnl|Hg17|chr19 (34746643-34747186)
               

               
               1-540, gnl|loxAfr1|scaffold_220290 (655-4)
               

               
               1-540, gnl|mm7|chr7 (37202807-37203426)
               

               
               1-540, gnl|Mm7|chr7 (37202893-37203398)
               

               
               1-540, gnl|monDom2|scaffold_35 (8226683-8225997)
               

               
               1-540, gnl|oryCun1|scaffold_173997 (52618-53236)
               

               
               1-540, gnl|panTro1|chr20_random (12911176-12910517)
               

               
               1-540, gnl|rheMac2|chr19 (36000637-36001292)
               

               
               1-540, gnl|rn3|chr1 (92543938-92544556)
               

               
               1-540, gnl|xenTro1|scaffold_391 (651800-651141)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fco (0.314416)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.314416)

	1-540, gnl\|bosTau2\|chr18 (54349091-54349631)
	1-540, gnl\|canFam2\|chr1 (124798924-124798250)
	1-540, gnl\|echTel1\|scaffold_246867 (2524-1847)
	1-540, gnl\|galGal2\|chr11 (8478997-8479653)
	1-540, gnl\|hg17\|chr19 (34746555-34747214)
	1-540, gnl\|Hg17\|chr19 (34746643-34747186)
	1-540, gnl\|loxAfr1\|scaffold_220290 (655-4)
	1-540, gnl\|mm7\|chr7 (37202807-37203426)
	1-540, gnl\|Mm7\|chr7 (37202893-37203398)
	1-540, gnl\|monDom2\|scaffold_35 (8226683-8225997)
	1-540, gnl\|oryCun1\|scaffold_173997 (52618-53236)
	1-540, gnl\|panTro1\|chr20_random (12911176-12910517)
	1-540, gnl\|rheMac2\|chr19 (36000637-36001292)
	1-540, gnl\|rn3\|chr1 (92543938-92544556)
	1-540, gnl\|xenTro1\|scaffold_391 (651800-651141)