Ss1.1-rpfco0105_m9.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAAATGCATTACATTAGCTGCATCTTTCAGAAATGTATTAACTTCTTAAAAGACGGAGAG AATAAACTGGACACCCTGATCAAAAGCTTGTTAAAAGGCCGAGCTTCTGATGGCTTTCCA GTATATCAAGAAAAGATCATTAGAGAAAGTATCAGAAAATTTCCTTACTGTGAAGCTACA CTCCTCCAGCAGCTGGTGCGAAGCATTGCTCCTGTTGAAATTGGTTCTGATCCCACCGCA TTCTCTGTACTTACCCAGGCCATCACTGGTCAGGTGGGTTTTGTGGATGTTGAATTTTGC ACTACCTGTGGAGAAAAGGGAGCAAGTAAAAGATGCTCAGTGTGCAAAATGGTAATATAT TGTGATCAAACCTGCCAGAAAACACACTGGTTTGCACATAAGAAAATCTGTAAGAATCTC AAGGACATTTATGAAAAGCAACAGTTGGAGGCTGCCAAAGAAAAGAGTGAAGAGGAGAAC AATGGCAAGCTTGACGTCAATTTGAATTGTGTTAATGAAGAGCAGCCAGAGGCGGAAACA GGAATCTCCCAGGAGGATTGCAATCCTAAGGATGCTATAGAAGGGGAGAAACAACTGCTT CAGAGTGATGTTGGGCTGGAAGGCTTACAGAAGGCTCCTGTAGGTCCGCAGGTATCTGAG GAGTAAGAGCCAGGCGGATGGTCCTCGTCCTGGCAGGTAGCTGGAAAACTCATGTGACCG CATCCTTCTTGCCTGCACACCTGCATGGCACTGCTGCCGGATTCCACAGTTCATAGATTA GATGCTTTCCAGCAAAGCTCTGTCTTCCATATCCTAATTTCCTATTGATTTCTATTTTAT AATTTGACAGATATTCCTAGGGAGAAATTGTTTTTCAAAATATAGAAGAAACATTTCTAT TTCTTTTCTGAGGCAAGCTTCCCAGCAGTTGTTCTAAAAGGAAGATAAATCCTCTTTTAA AGAAGAAATATATGCTCTAGGGAACAAAGCGGCAAGCAGAAAAGTTGTAGGAGAGAGGAG ATTTTCAAGAAAGAAAAATTTTATAGCCATAAAGATGGATAGTTAAAATAATCATAACTT ATATGTAAATAAAATGCATATAAATAGCATTTACATAGTGAAGTTCTTCTTACTAAGATG CAATGAAATGAAGAAAAGCTACATGTTAATGGATCTTTGCATAGTTCAGCTGATTGTAAT TTTCTACAGAATTTATCCTGAGCAGTCAGAACTTCATATAGTTCCTGCAGTGACGTTTAA TCTACAATATCTGTACCTTGAGAAATGTCAAATCCCCCAGGAAGAACTAAGGCATAGCCA CAGTTATTTCAGCATGTGCATTAAAAAAGATGTTTGGTGAAATTGTTGATTAAACAAAGA CTAAACATACTGTGTCCACAATTACAAAACTAATTCATGTGCCATTTTCTACTTCAAAGG CTTTTATCTTCCTGTCCACAAACTGATTTATAGCTATCATTTGTAGACTGTCCTGGCAAC ATATTTTAGTGTCTACAGTATTTAAATAGAGCTAAAGACTGTGAGATTTGAAGATAGTGT TGTGTTTCAAAGTTTCTTATGTTGGTTGTAAAATAAATTGTGCTTAATAATACAAAAAAA AAAAAAAAAAAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAAATGCATTACATTAGCTGCATCTTTCAGAAATGTATTAACTTCTTAAAAGACGGAGAG AATAAACTGGACACCCTGATCAAAAGCTTGTTAAAAGGCCGAGCTTCTGATGGCTTTCCA GTATATCAAGAAAAGATCATTAGAGAAAGTATCAGAAAATTTCCTTACTGTGAAGCTACA CTCCTCCAGCAGCTGGTGCGAAGCATTGCTCCTGTTGAAATTGGTTCTGATCCCACCGCA TTCTCTGTACTTACCCAGGCCATCACTGGTCAGGTGGGTTTTGTGGATGTTGAATTTTGC ACTACCTGTGGAGAAAAGGGAGCAAGTAAAAGATGCTCAGTGTGCAAAATGGTAATATAT TGTGATCAAACCTGCCAGAAAACACACTGGTTTGCACATAAGAAAATCTGTAAGAATCTC AAGGACATTTATGAAAAGCAACAGTTGGAGGCTGCCAAAGAAAAGAGTGAAGAGGAGAAC AATGGCAAGCTTGACGTCAATTTGAATTGTGTTAATGAAGAGCAGCCAGAGGCGGAAACA GGAATCTCCCAGGAGGATTGCAATCCTAAGGATGCTATAGAAGGGGAGAAACAACTGCTT CAGAGTGATGTTGGGCTGGAAGGCTTACAGAAGGCTCCTGTAGGTCCGCAGGTATCTGAG GAGTAAGAGCCAGGCGGATGGTCCTCGTCCTGGCAGGTAGCTGGAAAACTCATGTGACCG CATCCTTCTTGCCTGCACACCTGCATGGCACTGCTGCCGGATTCCACAGTTCATAGATTA GATGCTTTCCAGCAAAGCTCTGTCTTCCATATCCTAATTTCCTATTGATTTCTATTTTAT AATTTGACAGATATTCCTAGGGAGAAATTGTTTTTCAAAATATAGAAGAAACATTTCTAT TTCTTTTCTGAGGCAAGCTTCCCAGCAGTTGTTCTAAAAGGAAGATAAATCCTCTTTTAA AGAAGAAATATATGCTCTAGGGAACAAAGCGGCAAGCAGAAAAGTTGTAGGAGAGAGGAG ATTTTCAAGAAAGAAAAATTTTATAGCCATAAAGATGGATAGTTAAAATAATCATAACTT ATATGTAAATAAAATGCATATAAATAGCATTTACATAGTGAAGTTCTTCTTACTAAGATG CAATGAAATGAAGAAAAGCTACATGTTAATGGATCTTTGCATAGTTCAGCTGATTGTAAT TTTCTACAGAATTTATCCTGAGCAGTCAGAACTTCATATAGTTCCTGCAGTGACGTTTAA TCTACAATATCTGTACCTTGAGAAATGTCAAATCCCCCAGGAAGAACTAAGGCATAGCCA CAGTTATTTCAGCATGTGCATTAAAAAAGATGTTTGGTGAAATTGTTGATTAAACAAAGA CTAAACATACTGTGTCCACAATTACAAAACTAATTCATGTGCCATTTTCTACTTCAAAGG CTTTTATCTTCCTGTCCACAAACTGATTTATAGCTATCATTTGTAGACTGTCCTGGCAAC ATATTTTAGTGTCTACAGTATTTAAATAGAGCTAAAGACTGTGAGATTTGAAGATAGTGT TGTGTTTCAAAGTTTCTTATGTTGGTTGTAAAATAAATTGTGCTTAATAATACAAAAAAA AAAAAAAAAAAC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 104-221, - strand, RNAz p=0.614873 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 104-221, - strand, RNAz p=0.614873 |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 85-221, gnl|bosTau2|chr4 (8011208-8011072) | |
| 85-221, gnl|canFam2|chr14 (34073907-34074062) | |
| 85-221, gnl|danRer3|chr19 (45424628-45424783) | |
| 85-221, gnl|dasNov1|scaffold_14701 (51307-51462) | |
| 85-221, gnl|echTel1|scaffold_48703 (1452-1289) | |
| 85-221, gnl|fr1|chrUn (193500485-193500635) | |
| 85-221, gnl|galGal2|chr2 (27757873-27758021) | |
| 85-221, gnl|hg17|chr7 (16422487-16422642) | |
| 85-221, gnl|Hg17|chr7 (16422632-16422496) | |
| 85-221, gnl|loxAfr1|scaffold_9362 (15174-15329) | |
| 85-221, gnl|mm7|chr12 (34027410-34027255) | |
| 85-221, gnl|Mm7|chr12 (34027263-34027399) | |
| 85-221, gnl|monDom2|scaffold_57 (9843630-9843476) | |
| 85-221, gnl|panTro1|chr6 (17306820-17306975) | |
| 85-221, gnl|rheMac2|chr3 (109503615-109503460) | |
| 85-221, gnl|rn3|chr6 (54916136-54915981) | |
| 85-221, gnl|tetNig1|chrUn_random (31548338-31548183) | |
| 85-221, gnl|xenTro1|scaffold_23 (2522492-2522341) | |
| 223-355, gnl|bosTau2|chr4 (8006935-8006803) | |
| 223-355, gnl|Hg17|chr7 (16417714-16417582) | |
| 223-355, gnl|Mm7|chr12 (34033285-34033417) | |
| 482-1453, gnl|bosTau2|chr4 (8003330-8002338) | |
| 482-1453, gnl|Hg17|chr7 (16413810-16412828) | |
| 482-1453, gnl|Mm7|chr12 (34035835-34036721) | |
| 1463-1612, gnl|bosTau2|chr4 (8002278-8002133) | |
| 1463-1612, gnl|canFam2|chr14 (34066346-34066894) | |
| 1463-1612, gnl|dasNov1|scaffold_14701 (40692-41205) | |
| 1463-1612, gnl|echTel1|scaffold_222988 (2249-2798) | |
| 1463-1612, gnl|hg17|chr7 (16412629-16413192) | |
| 1463-1612, gnl|Hg17|chr7 (16412793-16412648) | |
| 1463-1612, gnl|loxAfr1|scaffold_18742 (443-1000) | |
| 1463-1612, gnl|mm7|chr12 (34036918-34036467) | |
| 1463-1612, gnl|Mm7|chr12 (34036759-34036897) | |
| 1463-1612, gnl|oryCun1|scaffold_121797 (7958-7425) | |
| 1463-1612, gnl|panTro1|chr6 (17296963-17297526) | |
| 1463-1612, gnl|rheMac2|chr3 (109513993-109513433) | |
| 1463-1612, gnl|rn3|chr6 (54926880-54926423) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 85-221, gnl|bosTau2|chr4 (8011208-8011072) | |
| 85-221, gnl|canFam2|chr14 (34073907-34074062) | |
| 85-221, gnl|danRer3|chr19 (45424628-45424783) | |
| 85-221, gnl|dasNov1|scaffold_14701 (51307-51462) | |
| 85-221, gnl|echTel1|scaffold_48703 (1452-1289) | |
| 85-221, gnl|fr1|chrUn (193500485-193500635) | |
| 85-221, gnl|galGal2|chr2 (27757873-27758021) | |
| 85-221, gnl|hg17|chr7 (16422487-16422642) | |
| 85-221, gnl|Hg17|chr7 (16422632-16422496) | |
| 85-221, gnl|loxAfr1|scaffold_9362 (15174-15329) | |
| 85-221, gnl|mm7|chr12 (34027410-34027255) | |
| 85-221, gnl|Mm7|chr12 (34027263-34027399) | |
| 85-221, gnl|monDom2|scaffold_57 (9843630-9843476) | |
| 85-221, gnl|panTro1|chr6 (17306820-17306975) | |
| 85-221, gnl|rheMac2|chr3 (109503615-109503460) | |
| 85-221, gnl|rn3|chr6 (54916136-54915981) | |
| 85-221, gnl|tetNig1|chrUn_random (31548338-31548183) | |
| 85-221, gnl|xenTro1|scaffold_23 (2522492-2522341) | |
| 223-355, gnl|bosTau2|chr4 (8006935-8006803) | |
| 223-355, gnl|Hg17|chr7 (16417714-16417582) | |
| 223-355, gnl|Mm7|chr12 (34033285-34033417) | |
| 482-1453, gnl|bosTau2|chr4 (8003330-8002338) | |
| 482-1453, gnl|Hg17|chr7 (16413810-16412828) | |
| 482-1453, gnl|Mm7|chr12 (34035835-34036721) | |
| 1463-1612, gnl|bosTau2|chr4 (8002278-8002133) | |
| 1463-1612, gnl|canFam2|chr14 (34066346-34066894) | |
| 1463-1612, gnl|dasNov1|scaffold_14701 (40692-41205) | |
| 1463-1612, gnl|echTel1|scaffold_222988 (2249-2798) | |
| 1463-1612, gnl|hg17|chr7 (16412629-16413192) | |
| 1463-1612, gnl|Hg17|chr7 (16412793-16412648) | |
| 1463-1612, gnl|loxAfr1|scaffold_18742 (443-1000) | |
| 1463-1612, gnl|mm7|chr12 (34036918-34036467) | |
| 1463-1612, gnl|Mm7|chr12 (34036759-34036897) | |
| 1463-1612, gnl|oryCun1|scaffold_121797 (7958-7425) | |
| 1463-1612, gnl|panTro1|chr6 (17296963-17297526) | |
| 1463-1612, gnl|rheMac2|chr3 (109513993-109513433) | |
| 1463-1612, gnl|rn3|chr6 (54926880-54926423) |
| Expressed library(ies): 30 entry(ies) | More info |
| Expressed library(ies): 30 entry(ies) | Help | Less info |
| cbl (1.14797) | |
| liv (1.02399) | |
| ret (0.7724) | |
| fco (0.628832) | |
| bfe (0.449573) | |
| lin (0.436808) | |
| cst (0.420109) | |
| tra (0.369276) | |
| gul (0.355177) | |
| sme (0.305437) | |
| ste (0.270416) | |
| eru (0.240096) | |
| cbe (0.239234) | |
| pan (0.23596) | |
| ece (0.229305) | |
| aor (0.195274) | |
| ldo (0.194005) | |
| cmu (0.186393) | |
| fbs (0.175346) | |
| sin (0.174948) | |
| rec (0.17307) | |
| tbr (0.154178) | |
| isp (0.150376) | |
| spl (0.143184) | |
| lyg (0.133103) | |
| kid (0.129735) | |
| sug (0.127291) | |
| bla (0.124347) | |
| ebs (0.118301) | |
| cty (0.10408) |
| Expressed library(ies): 30 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbl (1.14797) | |
| liv (1.02399) | |
| ret (0.7724) | |
| fco (0.628832) | |
| bfe (0.449573) | |
| lin (0.436808) | |
| cst (0.420109) | |
| tra (0.369276) | |
| gul (0.355177) | |
| sme (0.305437) | |
| ste (0.270416) | |
| eru (0.240096) | |
| cbe (0.239234) | |
| pan (0.23596) | |
| ece (0.229305) | |
| aor (0.195274) | |
| ldo (0.194005) | |
| cmu (0.186393) | |
| fbs (0.175346) | |
| sin (0.174948) | |
| rec (0.17307) | |
| tbr (0.154178) | |
| isp (0.150376) | |
| spl (0.143184) | |
| lyg (0.133103) | |
| kid (0.129735) | |
| sug (0.127291) | |
| bla (0.124347) | |
| ebs (0.118301) | |
| cty (0.10408) |