Non-Coding RNA Search

Ss1.1-rpfco0107_b22.5

Sequence:


               
               CAAGGGAATAAAATGACTGATATGTATTAAGCAACTGCTCTGAAGGAGGCAATATTCTCA
TTCTAATCCTTATAGCAACCCTATTCAGTAGGTATCCTCATTTCAGATTTGGAGACTGAG
GGCCAGAGCGATTAACTTGCCAAAGTCAGACCTTTAAGCTAAGTAGAATTTGAATGTCTG
ACAAAAGCTTCATTCTGTGTCGTTTTCTACTTCAATGTTCTTTTGCTGCTACGCACATTT
CCAGACCTGACTTGCTGCTGAAATGTGTGTTATGACTCATTCCTGATGGGGGTCTACCTA
TCTTCCAATAATATTCCTTGCTGATGTTGTATATGTGTTATCCACAGAAATGACTCCTTT
GAAATAAAGTAAATTTTTGGCTTTTTGTTCTGTTGGTGTGATTAAAAGCAAACAAGTACA
AATTTTAAAAACACAACAAAAAAGATCTGAGTTCCAAATAGAGCGTTTTCTTTAAGAGGC
ATGAAAAGCAACTATTGTTGTGTTACAGTGTTAAAATATTCAGTTTTCTTCGACAAAAAA
AATGTGTACTGTGTAAGCCTTGCAAAAAAATGAAAACAAAACAAAAAGAAGAGGCCTGCT
CTATGGCATTTGAATTTTTATAAAGGTTTCCTTGTGCCAAATAAGTGCAAAGATTTAATT
TACTATTAAAATCCATAAGCATATGTTATAGTTCCAGAAGAATTATTTTGTCATCAAGTG
ATTTTGATCTTCAGTGTCAATATTTATATTTAGATTAATTTTTATAAATGAAAATATTTT
AATGGTTTAAGAAAACGAGGCCAATAGGACCGTATCTTTGATGACTTCTGAAAGTATGCT
TGCCTTCATGTTATATGCACATTACCAAGAATTACTGTCAAGAGAAATGATGAAGAAGTA
AAAGTCATTTATGAAAATAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAGGGAATAAAATGACTGATATGTATTAAGCAACTGCTCTGAAGGAGGCAATATTCTCA
TTCTAATCCTTATAGCAACCCTATTCAGTAGGTATCCTCATTTCAGATTTGGAGACTGAG
GGCCAGAGCGATTAACTTGCCAAAGTCAGACCTTTAAGCTAAGTAGAATTTGAATGTCTG
ACAAAAGCTTCATTCTGTGTCGTTTTCTACTTCAATGTTCTTTTGCTGCTACGCACATTT
CCAGACCTGACTTGCTGCTGAAATGTGTGTTATGACTCATTCCTGATGGGGGTCTACCTA
TCTTCCAATAATATTCCTTGCTGATGTTGTATATGTGTTATCCACAGAAATGACTCCTTT
GAAATAAAGTAAATTTTTGGCTTTTTGTTCTGTTGGTGTGATTAAAAGCAAACAAGTACA
AATTTTAAAAACACAACAAAAAAGATCTGAGTTCCAAATAGAGCGTTTTCTTTAAGAGGC
ATGAAAAGCAACTATTGTTGTGTTACAGTGTTAAAATATTCAGTTTTCTTCGACAAAAAA
AATGTGTACTGTGTAAGCCTTGCAAAAAAATGAAAACAAAACAAAAAGAAGAGGCCTGCT
CTATGGCATTTGAATTTTTATAAAGGTTTCCTTGTGCCAAATAAGTGCAAAGATTTAATT
TACTATTAAAATCCATAAGCATATGTTATAGTTCCAGAAGAATTATTTTGTCATCAAGTG
ATTTTGATCTTCAGTGTCAATATTTATATTTAGATTAATTTTTATAAATGAAAATATTTT
AATGGTTTAAGAAAACGAGGCCAATAGGACCGTATCTTTGATGACTTCTGAAAGTATGCT
TGCCTTCATGTTATATGCACATTACCAAGAATTACTGTCAAGAGAAATGATGAAGAAGTA
AAAGTCATTTATGAAAATAAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               2-920, gnl|bosTau2|chr22 (11457040-11457950)
               

               
               2-920, gnl|Hg17|chr3 (40275884-40276815)
               

               
               2-920, gnl|Mm7|chr9 (120172324-120173240)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-920, gnl|bosTau2|chr22 (11457040-11457950)
               

               
               2-920, gnl|Hg17|chr3 (40275884-40276815)
               

               
               2-920, gnl|Mm7|chr9 (120172324-120173240)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

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               fco (0.78604)
               

               
               liv (0.438853)
               

               
               fce (0.271592)
               

               
               sag (0.182715)
               

               
               hyp (0.142837)
               

               
               tra (0.123092)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.78604)
               

               
               liv (0.438853)
               

               
               fce (0.271592)
               

               
               sag (0.182715)
               

               
               hyp (0.142837)
               

               
               tra (0.123092)

	2-920, gnl\|bosTau2\|chr22 (11457040-11457950)
	2-920, gnl\|Hg17\|chr3 (40275884-40276815)
	2-920, gnl\|Mm7\|chr9 (120172324-120173240)

	fco (0.78604)
	liv (0.438853)
	fce (0.271592)
	sag (0.182715)
	hyp (0.142837)
	tra (0.123092)