Non-Coding RNA Search

Ss1.1-rpfco0107_g7.5

Sequence:


               
               TGCATGTGAAAGTCTTTTCTACTGGATCTATATTTCCATTTATAAATGATTTTAAGTTAA
CATGAAGGCAGGGAAATAATTACCTTTCCAGTAAAAAATATAATTAGTTTAGTGGCACCA
TGGAGTATTTTAATATTTACTAAATTTGTGGTAGTAAGATTGCCTATACCTGTATCATTG
TGGAACTTCCTACTTCGTTGAAAACTTTCTTAAGAATCGACTGCAGTATTGTTTTCTTAT
GTGTGCAATGATGTGGAATGCCAGACAGGTATGTCTTAATGTGCTCATGTTCTGGTGTTA
TATGTTTCTTGACATGATTTTTCTTCCTAACTGTGGTTTTCAGGTATACAAGCCTAAATA
TTTATATACTTTGTCAGAGTTGTGCTAGGCTTTATGACAGGGTTTTGTCATTGTTGATGC
TGTTGTTGCTTCTTTTTATAAAAAGGCCAAATTTTCTTTCCAATCCAAACATTTAACCTG
TTTTCCTTTCCTTAAGCTATACCATTGTAATACCAGTTACCCTGTGGATCCATTGAGTAT
GCTTTCCCCTTTCTAATTAATTTTTGTATATTATTTCCAATGTTTGGAAGCTCTTTATAA
CCATTTTGGTATTCCTGTTACTCCCTATTTTAAAAAATATATATATTTATCAATCTAAAC
TTGTGCTGTGTAGTAAAGATTCAAGTTATGTTTGAGATATATAAACGTGTAGAATTTTAA
GTAAACCAATGACCTTGGGCAATATGTATTTTTGGTTTGGTTTTGTTATAAGCTGTTAGA
GGTATAAATTTATTTATCTGTTGTACAGATTTGAGTATGAGTTTTAATGTTTGAAAGATT
GCACTTGTTTGCTCTTACTATGTGTGGGATAAGATAATTTTTGTTCATTGTATATGAAAA
TATGGAATAATTTAAACAGTAAATAAACATTCTTTGGATGCTTATTTTTGTATTGTAAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCATGTGAAAGTCTTTTCTACTGGATCTATATTTCCATTTATAAATGATTTTAAGTTAA
CATGAAGGCAGGGAAATAATTACCTTTCCAGTAAAAAATATAATTAGTTTAGTGGCACCA
TGGAGTATTTTAATATTTACTAAATTTGTGGTAGTAAGATTGCCTATACCTGTATCATTG
TGGAACTTCCTACTTCGTTGAAAACTTTCTTAAGAATCGACTGCAGTATTGTTTTCTTAT
GTGTGCAATGATGTGGAATGCCAGACAGGTATGTCTTAATGTGCTCATGTTCTGGTGTTA
TATGTTTCTTGACATGATTTTTCTTCCTAACTGTGGTTTTCAGGTATACAAGCCTAAATA
TTTATATACTTTGTCAGAGTTGTGCTAGGCTTTATGACAGGGTTTTGTCATTGTTGATGC
TGTTGTTGCTTCTTTTTATAAAAAGGCCAAATTTTCTTTCCAATCCAAACATTTAACCTG
TTTTCCTTTCCTTAAGCTATACCATTGTAATACCAGTTACCCTGTGGATCCATTGAGTAT
GCTTTCCCCTTTCTAATTAATTTTTGTATATTATTTCCAATGTTTGGAAGCTCTTTATAA
CCATTTTGGTATTCCTGTTACTCCCTATTTTAAAAAATATATATATTTATCAATCTAAAC
TTGTGCTGTGTAGTAAAGATTCAAGTTATGTTTGAGATATATAAACGTGTAGAATTTTAA
GTAAACCAATGACCTTGGGCAATATGTATTTTTGGTTTGGTTTTGTTATAAGCTGTTAGA
GGTATAAATTTATTTATCTGTTGTACAGATTTGAGTATGAGTTTTAATGTTTGAAAGATT
GCACTTGTTTGCTCTTACTATGTGTGGGATAAGATAATTTTTGTTCATTGTATATGAAAA
TATGGAATAATTTAAACAGTAAATAAACATTCTTTGGATGCTTATTTTTGTATTGTAAAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               780-897, + strand, RNAz p=0.687525

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               780-897, + strand, RNAz p=0.687525

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AF355594, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AF355594, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-960, gnl|bosTau2|chr4 (1501275-1502244)
               

               
               1-960, gnl|Hg17|chr7 (93829957-93830948)
               

               
               1-960, gnl|Mm7|chr6 (4595221-4596235)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-960, gnl|bosTau2|chr4 (1501275-1502244)
               

               
               1-960, gnl|Hg17|chr7 (93829957-93830948)
               

               
               1-960, gnl|Mm7|chr6 (4595221-4596235)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               fco (0.471624)
               

               
               aor (0.390549)
               

               
               lin (0.291206)
               

               
               ret (0.257467)
               

               
               ton (0.1755)
               

               
               mga (0.160205)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               pty (0.142714)
               

               
               nmm (0.132802)
               

               
               ecc (0.115035)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.471624)
               

               
               aor (0.390549)
               

               
               lin (0.291206)
               

               
               ret (0.257467)
               

               
               ton (0.1755)
               

               
               mga (0.160205)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               pty (0.142714)
               

               
               nmm (0.132802)
               

               
               ecc (0.115035)

	1-960, gnl\|bosTau2\|chr4 (1501275-1502244)
	1-960, gnl\|Hg17\|chr7 (93829957-93830948)
	1-960, gnl\|Mm7\|chr6 (4595221-4596235)

	fco (0.471624)
	aor (0.390549)
	lin (0.291206)
	ret (0.257467)
	ton (0.1755)
	mga (0.160205)
	bfe (0.149858)
	liv (0.146284)
	pty (0.142714)
	nmm (0.132802)
	ecc (0.115035)