Non-Coding RNA Search

Ss1.1-rpfco0107_i24.5

Sequence:


               
               AGGGATCGAACCAGCAACCTGACGGTTCCTAGTCAGATTCATTCCTGCTGCGCCACGACG
GGAACTCCACATTTGAAGACTTTTAATTGAATTCCAATTCATAAATGTCTCTCCCCTTCT
CCAGACATACTTATTATGCCACTATAAGGTGCATGTACAGAAAACACCTCTGAGGTTTAC
ATATTAAATATTTTACCAGTGTTATCGCACACTGAATATCAAAAGCAGTCATTTGTTTTG
AGGGTTAGAGGAAAGTTTGGGGATTTGAGGGGTCAGGTATGACTAAGAGAGGCTCCAATT
GGTGAGTTAAGGAAAGTCTGTGGAAAGTGATGTTTAGATGTATACAAAAGGTATGGGTGT
TGGTTATAGAGTTCAATTTTAACAAGAAAGTTCGTTTTTTAAAAAAACTTGCATGTTCTA
TGGTTTATTAGCAAAGAGTGCAACAAGTTATTCAGGCTTTCCCCAGTACTAATTATATTG
GTTTCAAAAATTCTCCACAATCACAAGATGACATTTTCCTTTCATTTATGAACCAAGAGG
GGTAGGGAGATAGTACAACCCATGCAGTGACTTTTTGACTTCTTCGACTTGGGCAGAATC
CCTACTGTTTCATTGAATTTCTTACTGTACTGTATGTCTTACCAAGTGTGAAACCATAAT
ATATAGTTGATGGAAAATCAAAGGTTCCAGATCCTTTTGCATGAATATAAAGCTCATTAG
GGCCAATGAAACTGACATGTTTTTTAGCCTTTCTGGTAAAATGAAAATTTTAATGGCAAA
CCAATTCACCATTTACTAGCTTTGTGCAATATTATAATGGTAGAAGCAAAACACTAGCAC
ATTGTGCTTGGCTTTTCAGGATGGCTTAAACACCATCACACTAAAAGGACAGTATGCGAA
GTGTATTGTAAATGGCAGCTCTTGCAGATTTACAATATTTAAATATGCTCGGTTATCCTA
AAGTATTAAAAGTACAAAGAAAAAAACTAAGCAGGCATTTAGAGCAATACTATGAATTCT
TCAATAATTGTTTTGACGGTTGCCTTTTGCTCTTTAGTGCAACTTTTCTGCATTGTAATT
ATTGTATTGCTTTGTATTTCATGTTTTTTACACCCATGACTTCAGAGTTAAGTACTTGTA
CACCAAGTATTGCAATCACCTTTCTCTTCTTGTACATGCAATGTAACAACATACAGTTTT
GGTGCTTAACAATATTCCTTTTTTTCTTTAATAAAAGATATTTATTGAGTTAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGGATCGAACCAGCAACCTGACGGTTCCTAGTCAGATTCATTCCTGCTGCGCCACGACG
GGAACTCCACATTTGAAGACTTTTAATTGAATTCCAATTCATAAATGTCTCTCCCCTTCT
CCAGACATACTTATTATGCCACTATAAGGTGCATGTACAGAAAACACCTCTGAGGTTTAC
ATATTAAATATTTTACCAGTGTTATCGCACACTGAATATCAAAAGCAGTCATTTGTTTTG
AGGGTTAGAGGAAAGTTTGGGGATTTGAGGGGTCAGGTATGACTAAGAGAGGCTCCAATT
GGTGAGTTAAGGAAAGTCTGTGGAAAGTGATGTTTAGATGTATACAAAAGGTATGGGTGT
TGGTTATAGAGTTCAATTTTAACAAGAAAGTTCGTTTTTTAAAAAAACTTGCATGTTCTA
TGGTTTATTAGCAAAGAGTGCAACAAGTTATTCAGGCTTTCCCCAGTACTAATTATATTG
GTTTCAAAAATTCTCCACAATCACAAGATGACATTTTCCTTTCATTTATGAACCAAGAGG
GGTAGGGAGATAGTACAACCCATGCAGTGACTTTTTGACTTCTTCGACTTGGGCAGAATC
CCTACTGTTTCATTGAATTTCTTACTGTACTGTATGTCTTACCAAGTGTGAAACCATAAT
ATATAGTTGATGGAAAATCAAAGGTTCCAGATCCTTTTGCATGAATATAAAGCTCATTAG
GGCCAATGAAACTGACATGTTTTTTAGCCTTTCTGGTAAAATGAAAATTTTAATGGCAAA
CCAATTCACCATTTACTAGCTTTGTGCAATATTATAATGGTAGAAGCAAAACACTAGCAC
ATTGTGCTTGGCTTTTCAGGATGGCTTAAACACCATCACACTAAAAGGACAGTATGCGAA
GTGTATTGTAAATGGCAGCTCTTGCAGATTTACAATATTTAAATATGCTCGGTTATCCTA
AAGTATTAAAAGTACAAAGAAAAAAACTAAGCAGGCATTTAGAGCAATACTATGAATTCT
TCAATAATTGTTTTGACGGTTGCCTTTTGCTCTTTAGTGCAACTTTTCTGCATTGTAATT
ATTGTATTGCTTTGTATTTCATGTTTTTTACACCCATGACTTCAGAGTTAAGTACTTGTA
CACCAAGTATTGCAATCACCTTTCTCTTCTTGTACATGCAATGTAACAACATACAGTTTT
GGTGCTTAACAATATTCCTTTTTTTCTTTAATAAAAGATATTTATTGAGTTAAAAAAAAA
AAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               895-1011, - strand, RNAz p=0.617286
               

               
               1052-1171, - strand, RNAz p=0.960095

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               895-1011, - strand, RNAz p=0.617286
               

               
               1052-1171, - strand, RNAz p=0.960095

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               120-1253, gnl|bosTau2|chr10 (4443600-4444702)
               

               
               120-1253, gnl|Hg17|chr5 (78657612-78658794)
               

               
               120-1253, gnl|Mm7|chr13 (90494136-90493018)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               120-1253, gnl|bosTau2|chr10 (4443600-4444702)
               

               
               120-1253, gnl|Hg17|chr5 (78657612-78658794)
               

               
               120-1253, gnl|Mm7|chr13 (90494136-90493018)

Expressed library(ies): 16 entry(ies)

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Expressed library(ies): 16 entry(ies)

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               liv (0.585137)
               

               
               lin (0.436808)
               

               
               gul (0.355177)
               

               
               tra (0.246184)
               

               
               ece (0.229305)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               fco (0.157208)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               cbl (0.114797)
               

               
               cty (0.10408)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.585137)
               

               
               lin (0.436808)
               

               
               gul (0.355177)
               

               
               tra (0.246184)
               

               
               ece (0.229305)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               fco (0.157208)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               cbl (0.114797)
               

               
               cty (0.10408)

	895-1011, - strand, RNAz p=0.617286
	1052-1171, - strand, RNAz p=0.960095

	120-1253, gnl\|bosTau2\|chr10 (4443600-4444702)
	120-1253, gnl\|Hg17\|chr5 (78657612-78658794)
	120-1253, gnl\|Mm7\|chr13 (90494136-90493018)

	liv (0.585137)
	lin (0.436808)
	gul (0.355177)
	tra (0.246184)
	ece (0.229305)
	aor (0.195274)
	sag (0.182715)
	fco (0.157208)
	bfe (0.149858)
	ski (0.146735)
	lnt (0.142308)
	nca (0.136874)
	ova (0.129132)
	sug (0.127291)
	cbl (0.114797)
	cty (0.10408)