Non-Coding RNA Search

Ss1.1-rpfco0108_d18.5.5

Sequence:


               
               GTCTCTTTGGAATTCTTAGCTTCTACTTGGAGTGGAAGGACCAATCACTTAAGAATATTC
CATAGAAGGTTGGGGGGCCAAATTCTGCCCTTTTGCTTTATGTACAACTTGTATAAAAGT
CAAATTAAAATTACGTGAGTTTGGGGATAGGGTTAGTGCTTTGAAAAATGTTTGAACCAA
TCACAAATTACTTACGTATTATTCATTTCATATGGCCAGAATAGTGCTTAAAGTACATTA
CATTATAAACTGCCTTCATTTTGGGCTCTTTTTCTTTGTGTTCAAGTTTAGTTTACAAAA
CCTTTTAAGTGTGGAATGATTCGTTTATATGGGGTTAGGCGCTCCAAAGAATAGACTTCT
GAGACCAAAAATGATCTAGGCTATTTAGATTACAGTTTGAATCTTTCAAAGTTAGTTCGC
AGTCCGGAGGCAGTTACTATCTATAGTGTGATATGACCAATAGAAACATGTTTTTGCTTT
TGGCCTCATTTTGGAAAAGTAATGTATCTTTCCAATTGTTTTGCATAGGTTAAGATTAAT
TTGCCTTCTTTGAACATAGGCCAAATCATGGTATCCCAGCGACTAGCACAGTGCCTGGCA
CAGTCAGCGTACAGATGTTTGTGTGAGTGAATGAGGGGTGTGCAGAAGCTCATTATATGG
CACAGGGAAGCCAGCTGGCACAGGATTTACATACATTACCACAAGCGAACTAATGAGTTA
TGCTAATTTAATATATTTTTACCTCACACTAAGGTAATGCTTGATAAAGACATTAGTGCT
CGACTTTTAAAATGTTAGCACAGTGCTGTGCACATAGTGGGTGCTCAATAATATTGAATG
AACAGATTTGCAATACTAGACTTCATTCCATCTGACTACTCTGTTAAATTTTCAGTTAGA
GCATAGATACTGTAAAATCCAAATACACGTTAAATCTTGTTTTCCTGAAAGTATGACATC
TAAAATATTTGTAGAAAAGCTTTGTCACAACTGAGTTGAATGTTTGTATTTTCTTTTGCC
TTTGACTTTGATATTGGCTTGTAATGTCTCTTCATCATATGTAATATTGGTGGAACATGC
AACTCCACCCAAATCATGAGAATTTCTTAACCGTCGGTTGTCCAAAGCCATTACATGAAC
TCTTGGGTTGGATTTGGCTGGGTATAGCAGTTATTGGACCTTAAGAAATCAAAGGACTTC
GTATAAGTATATTTGAAAAGCAAATGCTAGAATCTTATTCAAGTGCATATGTACATTGTC
ACAGAGCAAAATGAACTGAAATTGGCTGCTATATTTTATATAATAATTTCTGCAAAAGCC
CATTTTTTGGATACTAATATTTGACATGGTTAATTCTTATTAATTTGTTGGAATTGTTTA
TTGTTAATAATGCAAATAGATAATTTTTAATTATCCTTAAGTAACATTTCACTATTAATG
GTTTGAAATGGGTGAAAAGCAAACCAATTTGAAATAAAATATGAACATGTGCCATTGTAT
TATAACACTATACACTTTCTTGACAGTTAAATTTTAAAAAAATGTGTTTTTTGTAGCATG
TATTGTATATGTTTATAGTATATGTAGTAAATAAAAATATGGCCAAATATTTGGCTTGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCTCTTTGGAATTCTTAGCTTCTACTTGGAGTGGAAGGACCAATCACTTAAGAATATTC
CATAGAAGGTTGGGGGGCCAAATTCTGCCCTTTTGCTTTATGTACAACTTGTATAAAAGT
CAAATTAAAATTACGTGAGTTTGGGGATAGGGTTAGTGCTTTGAAAAATGTTTGAACCAA
TCACAAATTACTTACGTATTATTCATTTCATATGGCCAGAATAGTGCTTAAAGTACATTA
CATTATAAACTGCCTTCATTTTGGGCTCTTTTTCTTTGTGTTCAAGTTTAGTTTACAAAA
CCTTTTAAGTGTGGAATGATTCGTTTATATGGGGTTAGGCGCTCCAAAGAATAGACTTCT
GAGACCAAAAATGATCTAGGCTATTTAGATTACAGTTTGAATCTTTCAAAGTTAGTTCGC
AGTCCGGAGGCAGTTACTATCTATAGTGTGATATGACCAATAGAAACATGTTTTTGCTTT
TGGCCTCATTTTGGAAAAGTAATGTATCTTTCCAATTGTTTTGCATAGGTTAAGATTAAT
TTGCCTTCTTTGAACATAGGCCAAATCATGGTATCCCAGCGACTAGCACAGTGCCTGGCA
CAGTCAGCGTACAGATGTTTGTGTGAGTGAATGAGGGGTGTGCAGAAGCTCATTATATGG
CACAGGGAAGCCAGCTGGCACAGGATTTACATACATTACCACAAGCGAACTAATGAGTTA
TGCTAATTTAATATATTTTTACCTCACACTAAGGTAATGCTTGATAAAGACATTAGTGCT
CGACTTTTAAAATGTTAGCACAGTGCTGTGCACATAGTGGGTGCTCAATAATATTGAATG
AACAGATTTGCAATACTAGACTTCATTCCATCTGACTACTCTGTTAAATTTTCAGTTAGA
GCATAGATACTGTAAAATCCAAATACACGTTAAATCTTGTTTTCCTGAAAGTATGACATC
TAAAATATTTGTAGAAAAGCTTTGTCACAACTGAGTTGAATGTTTGTATTTTCTTTTGCC
TTTGACTTTGATATTGGCTTGTAATGTCTCTTCATCATATGTAATATTGGTGGAACATGC
AACTCCACCCAAATCATGAGAATTTCTTAACCGTCGGTTGTCCAAAGCCATTACATGAAC
TCTTGGGTTGGATTTGGCTGGGTATAGCAGTTATTGGACCTTAAGAAATCAAAGGACTTC
GTATAAGTATATTTGAAAAGCAAATGCTAGAATCTTATTCAAGTGCATATGTACATTGTC
ACAGAGCAAAATGAACTGAAATTGGCTGCTATATTTTATATAATAATTTCTGCAAAAGCC
CATTTTTTGGATACTAATATTTGACATGGTTAATTCTTATTAATTTGTTGGAATTGTTTA
TTGTTAATAATGCAAATAGATAATTTTTAATTATCCTTAAGTAACATTTCACTATTAATG
GTTTGAAATGGGTGAAAAGCAAACCAATTTGAAATAAAATATGAACATGTGCCATTGTAT
TATAACACTATACACTTTCTTGACAGTTAAATTTTAAAAAAATGTGTTTTTTGTAGCATG
TATTGTATATGTTTATAGTATATGTAGTAAATAAAAATATGGCCAAATATTTGGCTTGGT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               1392-1510, - strand, RNAz p=0.909893

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1392-1510, - strand, RNAz p=0.909893

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               7-1620, gnl|bosTau2|chr19 (17084831-17083225)
               

               
               7-1620, gnl|Hg17|chr17 (1272676-1270753)
               

               
               7-1620, gnl|Mm7|chr11 (75785927-75787657)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-1620, gnl|bosTau2|chr19 (17084831-17083225)
               

               
               7-1620, gnl|Hg17|chr17 (1272676-1270753)
               

               
               7-1620, gnl|Mm7|chr11 (75785927-75787657)

Expressed library(ies): 38 entry(ies)

More info

Expressed library(ies): 38 entry(ies)

Help | Less info


               
               ret (1.1586)
               

               
               kid (0.648677)
               

               
               liv (0.585137)
               

               
               lyg (0.532411)
               

               
               fco (0.314416)
               

               
               fat (0.294855)
               

               
               lin (0.291206)
               

               
               fce (0.271592)
               

               
               cbe (0.239234)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               ste (0.135208)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               cbl (0.114797)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)
               

               
               ldo (0.0970026)

Expressed library(ies): 38 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (1.1586)
               

               
               kid (0.648677)
               

               
               liv (0.585137)
               

               
               lyg (0.532411)
               

               
               fco (0.314416)
               

               
               fat (0.294855)
               

               
               lin (0.291206)
               

               
               fce (0.271592)
               

               
               cbe (0.239234)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               ste (0.135208)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               cbl (0.114797)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)
               

               
               ldo (0.0970026)

	7-1620, gnl\|bosTau2\|chr19 (17084831-17083225)
	7-1620, gnl\|Hg17\|chr17 (1272676-1270753)
	7-1620, gnl\|Mm7\|chr11 (75785927-75787657)

	ret (1.1586)
	kid (0.648677)
	liv (0.585137)
	lyg (0.532411)
	fco (0.314416)
	fat (0.294855)
	lin (0.291206)
	fce (0.271592)
	cbe (0.239234)
	hea (0.204499)
	fcc (0.197785)
	aor (0.195274)
	sag (0.182715)
	mgm (0.180343)
	gul (0.177588)
	fty (0.17584)
	fbs (0.175346)
	sin (0.174948)
	rec (0.17307)
	fhi (0.169578)
	mga (0.160205)
	isp (0.150376)
	bfe (0.149858)
	spl (0.143184)
	csk (0.140746)
	cst (0.140036)
	ste (0.135208)
	ova (0.129132)
	sug (0.127291)
	thg (0.126791)
	tra (0.123092)
	eru (0.120048)
	med (0.116252)
	cbl (0.114797)
	spc (0.113366)
	cty (0.10408)
	nbm (0.0993246)
	ldo (0.0970026)