Non-Coding RNA Search

Ss1.1-rpfco0108_g20.5

Sequence:


               
               GACCTGTGCCTGCCGGTAAGACCAGCTGCTCTGGAGTGGAAGGGAGCTCCCCACCCCCGC
CCAGCAGGGAAGCATTCTCAAAATCTACTGGAGTGAGCACTTGACTCAGGGTGCAGCTGC
AAAGGCAGGACAGGGCTCACGGGCAGCCATCCGTCTCCTGGGGCATCGTTCTGCGGTCTG
TCATTGCTAGTGACGCCATCCCCTCATCGACGGTCCAAATCCTCTGAAGGGATCTGGGGA
TTAACCTGGCCTGATGGTTGCCCACAACCCATCCCCTCTGCTCTGAAGGCCTGAAAACTG
GACACATCCACAGTGTTTTGTGACCATCCTCTCATAACCTGAACTGAGGACACTTGCTCC
CTTCACATAGAAAGAACCTCTGTTTAAGCAATCAGTTTAAAACACATCGGGCCACATAGG
GATGCTGGAAAACAGGGCTGAAATAATGGTATAAAGGGATGTTTCCTGTCAAAATCCACT
GCAAAAGCTTTTATACATACGGTATGCACATATAACCAATGTTGGTTTCTTTTTCTTAAT
ATATATTTTATTTGAAAACAAAAAGGAGGCAGTTGACACCCTTCCCCACAGAGGTCATCA
TGCTGGTTATGTGTGCATTGTTTAAATATGCTTATTAAAATAACACGTACAATGATATGT
TGCAATACTAAAACATAACCAAGATTTTATATTTTTGTAAATTATACTTTCTATACTGTA
GACTGTGTATGTTACGTGTTTTTATGGAAAGCTAATAAATTAAAGGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACCTGTGCCTGCCGGTAAGACCAGCTGCTCTGGAGTGGAAGGGAGCTCCCCACCCCCGC
CCAGCAGGGAAGCATTCTCAAAATCTACTGGAGTGAGCACTTGACTCAGGGTGCAGCTGC
AAAGGCAGGACAGGGCTCACGGGCAGCCATCCGTCTCCTGGGGCATCGTTCTGCGGTCTG
TCATTGCTAGTGACGCCATCCCCTCATCGACGGTCCAAATCCTCTGAAGGGATCTGGGGA
TTAACCTGGCCTGATGGTTGCCCACAACCCATCCCCTCTGCTCTGAAGGCCTGAAAACTG
GACACATCCACAGTGTTTTGTGACCATCCTCTCATAACCTGAACTGAGGACACTTGCTCC
CTTCACATAGAAAGAACCTCTGTTTAAGCAATCAGTTTAAAACACATCGGGCCACATAGG
GATGCTGGAAAACAGGGCTGAAATAATGGTATAAAGGGATGTTTCCTGTCAAAATCCACT
GCAAAAGCTTTTATACATACGGTATGCACATATAACCAATGTTGGTTTCTTTTTCTTAAT
ATATATTTTATTTGAAAACAAAAAGGAGGCAGTTGACACCCTTCCCCACAGAGGTCATCA
TGCTGGTTATGTGTGCATTGTTTAAATATGCTTATTAAAATAACACGTACAATGATATGT
TGCAATACTAAAACATAACCAAGATTTTATATTTTTGTAAATTATACTTTCTATACTGTA
GACTGTGTATGTTACGTGTTTTTATGGAAAGCTAATAAATTAAAGGGA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-768, gnl|bosTau2|chr28 (32595925-32595139)
               

               
               1-768, gnl|Hg17|chr10 (48046594-48045809)
               

               
               1-768, gnl|Mm7|chr14 (31365095-31365867)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-768, gnl|bosTau2|chr28 (32595925-32595139)
               

               
               1-768, gnl|Hg17|chr10 (48046594-48045809)
               

               
               1-768, gnl|Mm7|chr14 (31365095-31365867)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               fco (0.314416)
               

               
               eye (0.170503)
               

               
               hyp (0.142837)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.314416)
               

               
               eye (0.170503)
               

               
               hyp (0.142837)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)

	1-768, gnl\|bosTau2\|chr28 (32595925-32595139)
	1-768, gnl\|Hg17\|chr10 (48046594-48045809)
	1-768, gnl\|Mm7\|chr14 (31365095-31365867)

	fco (0.314416)
	eye (0.170503)
	hyp (0.142837)
	ebs (0.118301)
	spc (0.113366)