Non-Coding RNA Search

Ss1.1-rpfco0108_n13.5

Sequence:


               
               GCGTAACATAGGTAAAGTAATAAGAGTAGTTTCCACAATTGATTCAAGAAACTTTCATTA
CTTTGTCTAAGCTTCTAAATAAACTATTTCCATTTTCCTTATTGAGATTGCAGTTTTCAG
AAAGCCTAATAGTCTTTTCTTTTATTGGAAGATAACTTGTGAAAGAAAATAAAAATTCAT
GCTATTCTTTCTTTGCTCTGTTTTTATGAATGAATCTTCCATAGGCAAATTTACAGTATA
GTCAAAGGAAGAAAAATAAAATTATGGGTCTTCTCTGATACCATATAAGTACAAAAACAA
TGAAATGTTCATTTTTGGTTTAGAACTTTTCCACACAAAATTCTCAGCCAACTTTCATAT
GTATCTTGCTAGCCCTAAGTTTGGAAGTTTGTGTTGGCATCAAAAAAATCAAACAAAATA
GGCAAAATTGCTATGCAGTTGATTACCAAATGAATCGATTCCTCACATTCATTTTTGTGT
CAATCCCTGTCAGTTAATTAGAAAAAAAAATTATTTAGTTGTTTTTATTCCCTGATAAAT
AATGAAATTGAAGTATGATATTTCTTTAAAGGGTTGTGCCTCCGAATATTTTTGGTGAGG
TCTGCTGTTTTTCATATTCATCATTTTATGCTACTGCCTTTTAAATAAACTAATGTATCT
TTAAATAGCACAAAAGTGTTTTAAAACTCATAATTTGAAAACAACTTGTGACTAACTTAA
TGTCTTCATATCTGTAGGGTATAAAAATATTGATATTTCAGTGATATTTCACTTGCTGCC
AGAAAAAAAAAAAAATTCTCAGTCTTTTGTAAGAGGGAGGAGGATTTTTGCATACATTTT
TACTCTTTAAATAAAGACACTTATACTGTCATAATAACAATTATGTATTTCTTTGTGGTT
TTTATTTTTTGTAATTTTACATAAAACAGTTATTTTCTATTTTTACTCAGATAAAAATAT
TTGTGCATAAAATGTAAAAATAGTAAAATGAGAAAAATAAAACTATTATACAGTAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGTAACATAGGTAAAGTAATAAGAGTAGTTTCCACAATTGATTCAAGAAACTTTCATTA
CTTTGTCTAAGCTTCTAAATAAACTATTTCCATTTTCCTTATTGAGATTGCAGTTTTCAG
AAAGCCTAATAGTCTTTTCTTTTATTGGAAGATAACTTGTGAAAGAAAATAAAAATTCAT
GCTATTCTTTCTTTGCTCTGTTTTTATGAATGAATCTTCCATAGGCAAATTTACAGTATA
GTCAAAGGAAGAAAAATAAAATTATGGGTCTTCTCTGATACCATATAAGTACAAAAACAA
TGAAATGTTCATTTTTGGTTTAGAACTTTTCCACACAAAATTCTCAGCCAACTTTCATAT
GTATCTTGCTAGCCCTAAGTTTGGAAGTTTGTGTTGGCATCAAAAAAATCAAACAAAATA
GGCAAAATTGCTATGCAGTTGATTACCAAATGAATCGATTCCTCACATTCATTTTTGTGT
CAATCCCTGTCAGTTAATTAGAAAAAAAAATTATTTAGTTGTTTTTATTCCCTGATAAAT
AATGAAATTGAAGTATGATATTTCTTTAAAGGGTTGTGCCTCCGAATATTTTTGGTGAGG
TCTGCTGTTTTTCATATTCATCATTTTATGCTACTGCCTTTTAAATAAACTAATGTATCT
TTAAATAGCACAAAAGTGTTTTAAAACTCATAATTTGAAAACAACTTGTGACTAACTTAA
TGTCTTCATATCTGTAGGGTATAAAAATATTGATATTTCAGTGATATTTCACTTGCTGCC
AGAAAAAAAAAAAAATTCTCAGTCTTTTGTAAGAGGGAGGAGGATTTTTGCATACATTTT
TACTCTTTAAATAAAGACACTTATACTGTCATAATAACAATTATGTATTTCTTTGTGGTT
TTTATTTTTTGTAATTTTACATAAAACAGTTATTTTCTATTTTTACTCAGATAAAAATAT
TTGTGCATAAAATGTAAAAATAGTAAAATGAGAAAAATAAAACTATTATACAGTAAAAAA
AAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               15-1015, gnl|bosTau2|chr1 (8037908-8038908)
               

               
               15-1015, gnl|Hg17|chr21 (26065662-26066642)
               

               
               15-1015, gnl|Mm7|chr16 (84861209-84862351)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               15-1015, gnl|bosTau2|chr1 (8037908-8038908)
               

               
               15-1015, gnl|Hg17|chr21 (26065662-26066642)
               

               
               15-1015, gnl|Mm7|chr16 (84861209-84862351)

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

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               fco (0.314416)
               

               
               ret (0.257467)
               

               
               fcc (0.197785)
               

               
               mgm (0.180343)
               

               
               mga (0.160205)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.314416)
               

               
               ret (0.257467)
               

               
               fcc (0.197785)
               

               
               mgm (0.180343)
               

               
               mga (0.160205)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)

	15-1015, gnl\|bosTau2\|chr1 (8037908-8038908)
	15-1015, gnl\|Hg17\|chr21 (26065662-26066642)
	15-1015, gnl\|Mm7\|chr16 (84861209-84862351)

	fco (0.314416)
	ret (0.257467)
	fcc (0.197785)
	mgm (0.180343)
	mga (0.160205)
	bfe (0.149858)
	liv (0.146284)
	lin (0.145603)
	lnt (0.142308)