Non-Coding RNA Search

Ss1.1-rpfco0109_e22.5

Sequence:


               
               CCCAGTGGATACAGACTGCGACTCTTCTTTTATGGTGTGTGCAATGTCATCTCTATCACC
TGTGCTCATACATCATTTTCAATAGTTCCTCCCAGTAATGGGACCACTATGTGGAGAGCC
ACAACCACAGTCTTCAGTGCCATTCTGGCTTTTTTACTTGTAGATGAGAAAATGGCTTAT
GTTGACATGGCTACAGTTGTTTGCAGCATCTTAGGTGTTTGTCTTGTCATGATCCCCAAC
ATTGTTGATGAAGACAATTCTTTGTTAAATGCCTGGAAGGAAGCCTTTGGGTACACCATG
ACCGTGATGGCTGGACTGACCACTGCTCTTTCCATGATAGTATACAGATCCATTAAGGAG
AAGATCAGCATGTGGACTGCACTGTTTACCTTTGGTTGGACTGGGACAGTCTGGGGAGTG
TCCACTATGTTTGTTCTTCAAGAACCCATCATCCCATTAGATGGAGAAACCTGGAGTTAT
CTCATTGCTATATGTGTTTGCTCTACTGCAGCCTTCTTAGGAGTTTATTATGCCTTGGAC
AAATTCCATCCAGCCTTGGTCAGCACAGTACAACATTTGGAGATTGTGGTAGCTATGGTC
TTGCAGCTTCTAGTGCTACACATATTTCCTAGTGTCTATGATGTCTTTGGAGGGGTAATT
ATTATGATTAGTGTTTTTGTCCTTGCTGGCTATAAACTTTACTGGAGGAATTTACGAAGG
CAGGATTATCAGGAAATACTAGATTCTCCCATTAAATGAATATCTGCTTCTTATCCTATT
AATGTTCAGTTATTAACAGGTACACTGCCATTTTAATGTTTACCTATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCAGTGGATACAGACTGCGACTCTTCTTTTATGGTGTGTGCAATGTCATCTCTATCACC
TGTGCTCATACATCATTTTCAATAGTTCCTCCCAGTAATGGGACCACTATGTGGAGAGCC
ACAACCACAGTCTTCAGTGCCATTCTGGCTTTTTTACTTGTAGATGAGAAAATGGCTTAT
GTTGACATGGCTACAGTTGTTTGCAGCATCTTAGGTGTTTGTCTTGTCATGATCCCCAAC
ATTGTTGATGAAGACAATTCTTTGTTAAATGCCTGGAAGGAAGCCTTTGGGTACACCATG
ACCGTGATGGCTGGACTGACCACTGCTCTTTCCATGATAGTATACAGATCCATTAAGGAG
AAGATCAGCATGTGGACTGCACTGTTTACCTTTGGTTGGACTGGGACAGTCTGGGGAGTG
TCCACTATGTTTGTTCTTCAAGAACCCATCATCCCATTAGATGGAGAAACCTGGAGTTAT
CTCATTGCTATATGTGTTTGCTCTACTGCAGCCTTCTTAGGAGTTTATTATGCCTTGGAC
AAATTCCATCCAGCCTTGGTCAGCACAGTACAACATTTGGAGATTGTGGTAGCTATGGTC
TTGCAGCTTCTAGTGCTACACATATTTCCTAGTGTCTATGATGTCTTTGGAGGGGTAATT
ATTATGATTAGTGTTTTTGTCCTTGCTGGCTATAAACTTTACTGGAGGAATTTACGAAGG
CAGGATTATCAGGAAATACTAGATTCTCCCATTAAATGAATATCTGCTTCTTATCCTATT
AATGTTCAGTTATTAACAGGTACACTGCCATTTTAATGTTTACCTATA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57103920|ref|XP_542795.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57103920|ref|XP_542795.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               160-279, + strand, RNAz p=0.762595

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               160-279, + strand, RNAz p=0.762595

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-828, gnl|bosTau2|chr1 (85371680-85372507)
               

               
               1-828, gnl|Hg17|chr3 (138056481-138057308)
               

               
               1-828, gnl|Mm7|chr9 (100196130-100195297)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-828, gnl|bosTau2|chr1 (85371680-85372507)
               

               
               1-828, gnl|Hg17|chr3 (138056481-138057308)
               

               
               1-828, gnl|Mm7|chr9 (100196130-100195297)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fhi (0.169578)
               

               
               fco (0.157208)
               

               
               hlv (0.139256)
               

               
               sug (0.127291)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.169578)
               

               
               fco (0.157208)
               

               
               hlv (0.139256)
               

               
               sug (0.127291)

	1-828, gnl\|bosTau2\|chr1 (85371680-85372507)
	1-828, gnl\|Hg17\|chr3 (138056481-138057308)
	1-828, gnl\|Mm7\|chr9 (100196130-100195297)