Non-Coding RNA Search

Ss1.1-rpfco0109_h10.5

Sequence:


               
               AGATTATGGTGGTAGGGGAGATTATGGTGGAAGAGGGGGATATGGGGGAAGAGGGGGCTA
TGGTGGAAGAGGTTATGGAGATCCATATGGAGGAGGTGGTGGTGGATATAGAAGATACTA
AAAACTACAAAATATAGATAGCAGTGCTGACTTCTTGATACATTAGGCATAGTGTTCTAA
ATAACTACTTGAAAGTCATCTTTGAACTAAACACCATGTTAGATTCCCTGATACATTCTT
AGATTGGGTTTAATATGTAAAGAGGATTGTTTTATACTACTATTTGATCTCTTAGACAAA
GTGATGATTTTTTCCATATTCTGTGTACCCTTGAGCATGTTGTCTTTTTAAAAAACAAAA
AAATTAGCAAAAATTATTTTTAAAAATGTAAATATATTATTACCATCAAACTTGGAAAAT
GGAAAGTATTTTATTGCCATGATTGAATTTAGATTGTAACCTGTATTTTTATTCAGGTGT
GAGACACTTAATAATTGACCCTACTTTGTAGTGGAAAGGAATATAGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGATTATGGTGGTAGGGGAGATTATGGTGGAAGAGGGGGATATGGGGGAAGAGGGGGCTA
TGGTGGAAGAGGTTATGGAGATCCATATGGAGGAGGTGGTGGTGGATATAGAAGATACTA
AAAACTACAAAATATAGATAGCAGTGCTGACTTCTTGATACATTAGGCATAGTGTTCTAA
ATAACTACTTGAAAGTCATCTTTGAACTAAACACCATGTTAGATTCCCTGATACATTCTT
AGATTGGGTTTAATATGTAAAGAGGATTGTTTTATACTACTATTTGATCTCTTAGACAAA
GTGATGATTTTTTCCATATTCTGTGTACCCTTGAGCATGTTGTCTTTTTAAAAAACAAAA
AAATTAGCAAAAATTATTTTTAAAAATGTAAATATATTATTACCATCAAACTTGGAAAAT
GGAAAGTATTTTATTGCCATGATTGAATTTAGATTGTAACCTGTATTTTTATTCAGGTGT
GAGACACTTAATAATTGACCCTACTTTGTAGTGGAAAGGAATATAGAC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-528, gnl|bosTau2|chr10 (22623498-22624046)
               

               
               1-528, gnl|Hg17|chr15 (36564023-36564561)
               

               
               1-528, gnl|Mm7|chr2 (117011717-117012223)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-528, gnl|bosTau2|chr10 (22623498-22624046)
               

               
               1-528, gnl|Hg17|chr15 (36564023-36564561)
               

               
               1-528, gnl|Mm7|chr2 (117011717-117012223)

Expressed library(ies): 13 entry(ies)

More info

Expressed library(ies): 13 entry(ies)

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               fco (0.314416)
               

               
               cbe (0.239234)
               

               
               ece (0.229305)
               

               
               fty (0.17584)
               

               
               cut (0.169924)
               

               
               fat (0.147427)
               

               
               hyp (0.142837)
               

               
               csk (0.140746)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               eru (0.120048)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.314416)
               

               
               cbe (0.239234)
               

               
               ece (0.229305)
               

               
               fty (0.17584)
               

               
               cut (0.169924)
               

               
               fat (0.147427)
               

               
               hyp (0.142837)
               

               
               csk (0.140746)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               eru (0.120048)

	1-528, gnl\|bosTau2\|chr10 (22623498-22624046)
	1-528, gnl\|Hg17\|chr15 (36564023-36564561)
	1-528, gnl\|Mm7\|chr2 (117011717-117012223)

	fco (0.314416)
	cbe (0.239234)
	ece (0.229305)
	fty (0.17584)
	cut (0.169924)
	fat (0.147427)
	hyp (0.142837)
	csk (0.140746)
	ssp (0.13552)
	ste (0.135208)
	kid (0.129735)
	ova (0.129132)
	eru (0.120048)