Non-Coding RNA Search

Ss1.1-rpfco0109_l12.5

Sequence:


               
               TGTTTTGAGTTTTTTAACATAAAAAGGTGCGCCACAAACCACACTTTTAAAGCATTTGCC
AACAACTCTAGTGCATTACATATTCCAAAGCACATTCAAATACGTTGTTATTTAGTCCTC
GTGACTAACGTACGTGTGAAATAGGTTAGGTAGACAGTCCAATCTCTATTTTACAGCAGA
AGAAACTAAAAAGCAGGGAAGTTACATTTTTAATGTTGCGCAGCTACAAGTACCCAAATT
GTGACTAAAGCTGTGGTCTCCAATCTCTTAAGTTGGAAGAGACCTAACTCATTAACTGAG
AGGAAGTCAATCGGAGAAAAAGGATTTTCTAGAGTAGAATAAAGTATTGCTACAGCTTTA
TGATTTCATACAGGGAAATCTTCATTTACTATATCTTGATGGTAAGTCTGGCCAACTCTG
AATTATTCATGTTCCTAAAACCAAGGAGAACAAAGATAAATGAAAACTTTAGAAGAAAGA
ACAATGCCTTACTTCATAGACTCTTTACTTGCCAGCACCCTTCCAGATCTAGCTGGTTTC
CATAGATTCTAATAGGTAACTAGAATGACTGATTTGAGTTCTGTCCTCTTTCTCTTTTGC
TACCCTACCTTGGTTACAGCATCAAAATATCTGAAAGATGTGTAATGAAAAAAAAAAAAA
AGATGTGAAAAAAGTCACTCATCAGTTAGCTAAGTTAATTTATAAAAGATTTAAATTCCT
TTTTAAAATTTTTACTAGTTTTTTGAAAGCCTTTACATTAGTATGGAATCGGTAACTTCC
CTTACCTACCCACTAAAATCATTTTAGATCAGACTTAGATGAAATGAATTCACAATATTT
ATTTTTATACAATGTCAGTTTGCTTTCTAAACTTATTCCTTTCACTCATTTATCAGCCAC
TTTAAACACAGATAATCTTTTCAAAAACATTTTTATTTTTGCCCACCAATCATTTTTTTC
TTTAAAAGATAAAATTTCATAGAACTTAATAAAATGGAAACTGATGGTAATGTATCTTCT
GGGAGACATCAGAAATTCCATGGCATAGACTATCAATGATATAGGCAAATGAAGTACATT
TTTAAAGGTCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTTTTGAGTTTTTTAACATAAAAAGGTGCGCCACAAACCACACTTTTAAAGCATTTGCC
AACAACTCTAGTGCATTACATATTCCAAAGCACATTCAAATACGTTGTTATTTAGTCCTC
GTGACTAACGTACGTGTGAAATAGGTTAGGTAGACAGTCCAATCTCTATTTTACAGCAGA
AGAAACTAAAAAGCAGGGAAGTTACATTTTTAATGTTGCGCAGCTACAAGTACCCAAATT
GTGACTAAAGCTGTGGTCTCCAATCTCTTAAGTTGGAAGAGACCTAACTCATTAACTGAG
AGGAAGTCAATCGGAGAAAAAGGATTTTCTAGAGTAGAATAAAGTATTGCTACAGCTTTA
TGATTTCATACAGGGAAATCTTCATTTACTATATCTTGATGGTAAGTCTGGCCAACTCTG
AATTATTCATGTTCCTAAAACCAAGGAGAACAAAGATAAATGAAAACTTTAGAAGAAAGA
ACAATGCCTTACTTCATAGACTCTTTACTTGCCAGCACCCTTCCAGATCTAGCTGGTTTC
CATAGATTCTAATAGGTAACTAGAATGACTGATTTGAGTTCTGTCCTCTTTCTCTTTTGC
TACCCTACCTTGGTTACAGCATCAAAATATCTGAAAGATGTGTAATGAAAAAAAAAAAAA
AGATGTGAAAAAAGTCACTCATCAGTTAGCTAAGTTAATTTATAAAAGATTTAAATTCCT
TTTTAAAATTTTTACTAGTTTTTTGAAAGCCTTTACATTAGTATGGAATCGGTAACTTCC
CTTACCTACCCACTAAAATCATTTTAGATCAGACTTAGATGAAATGAATTCACAATATTT
ATTTTTATACAATGTCAGTTTGCTTTCTAAACTTATTCCTTTCACTCATTTATCAGCCAC
TTTAAACACAGATAATCTTTTCAAAAACATTTTTATTTTTGCCCACCAATCATTTTTTTC
TTTAAAAGATAAAATTTCATAGAACTTAATAAAATGGAAACTGATGGTAATGTATCTTCT
GGGAGACATCAGAAATTCCATGGCATAGACTATCAATGATATAGGCAAATGAAGTACATT
TTTAAAGGTCTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               562-681, + strand, RNAz p=0.944099

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               562-681, + strand, RNAz p=0.944099

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-272, gnl|bosTau2|chr2 (19223200-19223469)
               

               
               1-272, gnl|Hg17|chr12 (103699405-103699144)
               

               
               1-272, gnl|Mm7|chr10 (82773414-82773160)
               


               
               286-1092, gnl|bosTau2|chr2 (19223513-19224320)
               

               
               286-1092, gnl|Hg17|chr12 (103699089-103698298)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-272, gnl|bosTau2|chr2 (19223200-19223469)
               

               
               1-272, gnl|Hg17|chr12 (103699405-103699144)
               

               
               1-272, gnl|Mm7|chr10 (82773414-82773160)
               


               
               286-1092, gnl|bosTau2|chr2 (19223513-19224320)
               

               
               286-1092, gnl|Hg17|chr12 (103699089-103698298)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               nms (0.213858)
               

               
               tes (0.207814)
               

               
               fco (0.157208)
               

               
               sug (0.127291)
               

               
               ecc (0.115035)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (0.213858)
               

               
               tes (0.207814)
               

               
               fco (0.157208)
               

               
               sug (0.127291)
               

               
               ecc (0.115035)

	1-272, gnl\|bosTau2\|chr2 (19223200-19223469)
	1-272, gnl\|Hg17\|chr12 (103699405-103699144)
	1-272, gnl\|Mm7\|chr10 (82773414-82773160)

	286-1092, gnl\|bosTau2\|chr2 (19223513-19224320)
	286-1092, gnl\|Hg17\|chr12 (103699089-103698298)

	nms (0.213858)
	tes (0.207814)
	fco (0.157208)
	sug (0.127291)
	ecc (0.115035)