Non-Coding RNA Search

Ss1.1-rpfco0110_g22.5

Sequence:


               
               GGGGAAGGAGTTGAAGGAAATCAAAATGCTTTGTAATAATCTGAGGCTTATGAAATTAAC
TTCTAGAGAAAGTTACTGAACTGTCCTAACTTCTAGAGAAAGATACTAAAACACACCATA
TTGGTTGTGAAATTAATCTGCAGAGCATGAAAATGTAAACTTCATGCATCCTCTGTGCAG
GATTCTGATTTAGAGAGTTCAGAAATTACTCTGACAGATGCAAAATGAACCTCTAGTCTC
ACTGCTACCAGAATCCTCTTTTCTCCCCTAATATAATCCTTATTCTGCTGCTCATTTATC
ACTAACATATTCACAGAAGGGAAGTGGCAGGAAGGGTCTTTTACCCAAGGATTTGCAGTT
TGTGTTTACTTTCATTTCTGAGAACCAAAAGCAACATGAAAGGAAACACCTAATGACCAG
AACTCTCACCTGGTGTGTGTCCTTGATTTTATTAAACATCATTTTGAGAGTCAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGAAGGAGTTGAAGGAAATCAAAATGCTTTGTAATAATCTGAGGCTTATGAAATTAAC
TTCTAGAGAAAGTTACTGAACTGTCCTAACTTCTAGAGAAAGATACTAAAACACACCATA
TTGGTTGTGAAATTAATCTGCAGAGCATGAAAATGTAAACTTCATGCATCCTCTGTGCAG
GATTCTGATTTAGAGAGTTCAGAAATTACTCTGACAGATGCAAAATGAACCTCTAGTCTC
ACTGCTACCAGAATCCTCTTTTCTCCCCTAATATAATCCTTATTCTGCTGCTCATTTATC
ACTAACATATTCACAGAAGGGAAGTGGCAGGAAGGGTCTTTTACCCAAGGATTTGCAGTT
TGTGTTTACTTTCATTTCTGAGAACCAAAAGCAACATGAAAGGAAACACCTAATGACCAG
AACTCTCACCTGGTGTGTGTCCTTGATTTTATTAAACATCATTTTGAGAGTCAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               142-248, - strand, RNAz p=0.670563
               

               
               156-274, - strand, RNAz p=0.99422

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               142-248, - strand, RNAz p=0.670563
               

               
               156-274, - strand, RNAz p=0.99422

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               79-480, gnl|bosTau2|chr1 (7986236-7986635)
               

               
               79-480, gnl|canFam2|chr31 (24215693-24216192)
               

               
               79-480, gnl|echTel1|scaffold_322002 (4905-4476)
               

               
               79-480, gnl|hg17|chr21 (26008962-26009453)
               

               
               79-480, gnl|Hg17|chr21 (26009126-26009546)
               

               
               79-480, gnl|loxAfr1|scaffold_61949 (3478-2980)
               

               
               79-480, gnl|mm7|chr16 (84821507-84821948)
               

               
               79-480, gnl|oryCun1|scaffold_215112 (38101-37634)
               

               
               79-480, gnl|panTro1|chr22 (25983839-25984330)
               

               
               79-480, gnl|rheMac2|chr3 (20955794-20955304)
               

               
               79-480, gnl|rn3|chr11 (24312180-24312623)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               79-480, gnl|bosTau2|chr1 (7986236-7986635)
               

               
               79-480, gnl|canFam2|chr31 (24215693-24216192)
               

               
               79-480, gnl|echTel1|scaffold_322002 (4905-4476)
               

               
               79-480, gnl|hg17|chr21 (26008962-26009453)
               

               
               79-480, gnl|Hg17|chr21 (26009126-26009546)
               

               
               79-480, gnl|loxAfr1|scaffold_61949 (3478-2980)
               

               
               79-480, gnl|mm7|chr16 (84821507-84821948)
               

               
               79-480, gnl|oryCun1|scaffold_215112 (38101-37634)
               

               
               79-480, gnl|panTro1|chr22 (25983839-25984330)
               

               
               79-480, gnl|rheMac2|chr3 (20955794-20955304)
               

               
               79-480, gnl|rn3|chr11 (24312180-24312623)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fcc (0.197785)
               

               
               fco (0.157208)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               fco (0.157208)

	142-248, - strand, RNAz p=0.670563
	156-274, - strand, RNAz p=0.99422

	79-480, gnl\|bosTau2\|chr1 (7986236-7986635)
	79-480, gnl\|canFam2\|chr31 (24215693-24216192)
	79-480, gnl\|echTel1\|scaffold_322002 (4905-4476)
	79-480, gnl\|hg17\|chr21 (26008962-26009453)
	79-480, gnl\|Hg17\|chr21 (26009126-26009546)
	79-480, gnl\|loxAfr1\|scaffold_61949 (3478-2980)
	79-480, gnl\|mm7\|chr16 (84821507-84821948)
	79-480, gnl\|oryCun1\|scaffold_215112 (38101-37634)
	79-480, gnl\|panTro1\|chr22 (25983839-25984330)
	79-480, gnl\|rheMac2\|chr3 (20955794-20955304)
	79-480, gnl\|rn3\|chr11 (24312180-24312623)