Non-Coding RNA Search

Ss1.1-rpfco0110_i23.5

Sequence:


               
               GCAGACTTCTTTTTTTAATGCCTCTAAAATTCTGTTTTATAGATTAACTTATATTGTGTG
CCAAGTGTTTAAGAGGGTTTATTTGCCAACAAGTATGAAGAAACATATTGATATATCTGA
GCTGCTTAGGTTTATCAAAGGTCACCTGGATCTCTTCAGTTGCGTCATCCCTGTATTTAA
ATTGAGCTTTAATAAATTGCTTCAGTCCAAAAATTACAGGAAAGGTGTATTCTTAATTGA
TGAGTGAATTGATCTCTTTTTGAAAGGGGACTCCTTTGCATTCTAAAAAGGAAAGACATC
ACAGCAATAGATCCTATAAGAACATGCTAAGCAAATATTTTTCCAGGCTGTGCTGTGCAT
TTTTAAAAGTTCTAATTTAATTGCTTTTAATATATATGTACATGTATAAGTTATTTTAAC
TGTGGAGAATTATTTAAGTTGAAAGACTGGTTTGATTTGCCTATGGTGTGAAATCCTTTG
TTATTTTTCTAAAAAAAAAAAAACTTAAAAAGAAATAAAACTAAGAGCAAGAAGCTATTT
ACCCAAAGTGAGCTTTCAGTTTTAGTTTGCATGGCTGTTTGCCTGCCTTTCTATCCTATG
AAAATCAAGAAAACCTTTTTGGAAAATGGAGTCTGCTATTTTCCACTCCTTGCAGATAAT
ACAAATTCAGTTTGTCAGGTTGGATGGTGAGTGGGGAGCGGTGATGGATCTATTGGCGGG
TTTTGGATGTGTAAAGAATGATATATATATTAAATAGGTCAATCAGACTATGACAGCTAT
GTATGACCATTTGTATGTGTATCTATGTCAGAAAGAATCTTTATTAAAATATTTTGATCA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGACTTCTTTTTTTAATGCCTCTAAAATTCTGTTTTATAGATTAACTTATATTGTGTG
CCAAGTGTTTAAGAGGGTTTATTTGCCAACAAGTATGAAGAAACATATTGATATATCTGA
GCTGCTTAGGTTTATCAAAGGTCACCTGGATCTCTTCAGTTGCGTCATCCCTGTATTTAA
ATTGAGCTTTAATAAATTGCTTCAGTCCAAAAATTACAGGAAAGGTGTATTCTTAATTGA
TGAGTGAATTGATCTCTTTTTGAAAGGGGACTCCTTTGCATTCTAAAAAGGAAAGACATC
ACAGCAATAGATCCTATAAGAACATGCTAAGCAAATATTTTTCCAGGCTGTGCTGTGCAT
TTTTAAAAGTTCTAATTTAATTGCTTTTAATATATATGTACATGTATAAGTTATTTTAAC
TGTGGAGAATTATTTAAGTTGAAAGACTGGTTTGATTTGCCTATGGTGTGAAATCCTTTG
TTATTTTTCTAAAAAAAAAAAAACTTAAAAAGAAATAAAACTAAGAGCAAGAAGCTATTT
ACCCAAAGTGAGCTTTCAGTTTTAGTTTGCATGGCTGTTTGCCTGCCTTTCTATCCTATG
AAAATCAAGAAAACCTTTTTGGAAAATGGAGTCTGCTATTTTCCACTCCTTGCAGATAAT
ACAAATTCAGTTTGTCAGGTTGGATGGTGAGTGGGGAGCGGTGATGGATCTATTGGCGGG
TTTTGGATGTGTAAAGAATGATATATATATTAAATAGGTCAATCAGACTATGACAGCTAT
GTATGACCATTTGTATGTGTATCTATGTCAGAAAGAATCTTTATTAAAATATTTTGATCA
AAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               10-842, gnl|bosTau2|chr14 (18678344-18679202)
               

               
               10-842, gnl|Hg17|chr8 (65657903-65658738)
               

               
               10-842, gnl|Mm7|chr3 (17782480-17783314)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               10-842, gnl|bosTau2|chr14 (18678344-18679202)
               

               
               10-842, gnl|Hg17|chr8 (65657903-65658738)
               

               
               10-842, gnl|Mm7|chr3 (17782480-17783314)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               fce (0.814775)
               

               
               fco (0.78604)
               

               
               fcc (0.39557)
               

               
               ret (0.3862)
               

               
               cbe (0.239234)
               

               
               bfe (0.149858)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               ecc (0.115035)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.814775)
               

               
               fco (0.78604)
               

               
               fcc (0.39557)
               

               
               ret (0.3862)
               

               
               cbe (0.239234)
               

               
               bfe (0.149858)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               ecc (0.115035)

	10-842, gnl\|bosTau2\|chr14 (18678344-18679202)
	10-842, gnl\|Hg17\|chr8 (65657903-65658738)
	10-842, gnl\|Mm7\|chr3 (17782480-17783314)

	fce (0.814775)
	fco (0.78604)
	fcc (0.39557)
	ret (0.3862)
	cbe (0.239234)
	bfe (0.149858)
	spl (0.143184)
	pty (0.142714)
	ecc (0.115035)