Non-Coding RNA Search

Ss1.1-rpfco0110_j21.5

Sequence:


               
               ATTCATTACATCCAAGTTTGGAAAACAGTGGCTATTTCAGTGGCTCTTATTCAAGCTTTC
CATCAAATCTTGTAAACTCCGGACCAAGTCAAGATTTTTCTGCCTTGAGGATAAGTCCCT
ACCATTGTGCAATGAATACCGAAAAAGACAGATTACTTACTTTCCAGATGTGGCCATTGA
CCTTTCTGTCGCCAGCAGATCTGGCAAAAGCAGGCTTTTACTACATAGGACCTGGAGACA
GAGTGGCTTGCTTTGCCTGTGGTGGAAAATTGAGCAATTGGGAACCAAAGGATGATGCTA
TGACAGAACACTTACGACATTTCCCCAACTGCCCATTTTTGGGAAATCAGCTTCAAGACT
CTTCAAGATACACTGTTTCTAACCTGAGCATGCAGACATATGCAGCCCGCTTTAAAACAT
TCTGTAACTGGCCTTCTAGTATTCCAGTTCATCCTGAACAGCTTGCAAGTGCAGGTTTTT
ATTATATGGGTCACAGTGATGATGTGAAGTGCTTCTGCTGTGATGGTGGGCTGAGGTGTT
GGGAATCTGGAGATGATCCATGGGTGGAACATGCCAAGTGGTTTCCAAGGTGTGAGTACT
TGATACGAATTAAAGGACAGGAGTTCATCAGTCGCGTTCAAGCCAGTTACCCTCATCTAC
TTGAACAGCTATTGTCTACTTCAGACAATCCAGAAGATGAAAATGCAGAGCCACCAATTG
TTCATTTTGGACCTGGAGAAAACCATTCAGAAGATGCAGTCATGATGAATACACCTGTGG
TTAAAGCAGCTTTGGAAATGGGTTTTAGTAGAAGGCTTGTAAAGCAGACAGTTCAGAGTA
AAATCCTAACAACTGGAGAGAATTATAAAACCATCAGTGATCTTGTATTAGATTTACTTA
ATGCAGAAGATGAAATAAGGGAAGAGGAGAAAGAAAGAGCAACTGAAGAAAAAGAATCAG
ATGACCTATCATTGATCCGGAAGAACAGAATGGCACTTTTTCAACACTTGACTTGTGTGC
TTCCAATCCTGGATAGTCTACTAATTGCCAGAGTGATTAGTGAACAAGAACATGATGTTA
TTAAACAGAAAACACAGACATCTTTACAAGCAAGAGAACTGATTGATATTATTTTAGTAA
AAGGAAATTATGCAGCCACCATATTCAAAAACTCTCTACAAGAAATCGATCCCATGTTAT
ACAAGCATTTATTTGTGCAACAAGACATAAAGTATATTCCCACAGAAAATGTTTCAGATT
TATCAATGGAAGAACAATTAAGGAGACTACAGGAAGAAAGAACATGCAAAGTGTGTATGG
ACAAAGAAGTGTCCATAGTGTTTATTCCGTGTGGTCATCTGGTAGTCTGCAAAGATTGTG
CCCCTTCTCTAAGAAAATGTCCTATTTGTAGAGGTACAATCAAGGGTACAGTTCGTACAT
TTCTTTCATGAAGATCTAAAACTTTGCCTAAACTTTAGAACTAATGGATTAAATGTATTG
TAATCTTAACTTTGATACTGCTTTGGTTTCTTTAAATTTTTTATTTATTTACAACTCAGA
AAATTTTGTTTTATATAAATGTATTTATATAAATATATATCTAAAACATGAACATATATA
TTTTATATCGTAAGGGAATGATAGGATTTTGTTCTTGTGAACAAAGAATAGGGAAAGCAC
TACAAGCATAATACTAAATGAAAATTATAGTACTATTGATATTGTAACTGAAGTAAAAAT
TTTTTTGAACTGATCTTTCAGAATTTTCAGTATTTTGGAGAAACATGGATTCTCTTGCTT
TATCTATCCCTGTCTTATACATAGAAGGTCTTGATGTTTGTTGAATGACTTTTTCAGGAC
ATGATGTTTTTGTAAAGAATTCTGTTAAGCAACATTTTAATAAAGCGATCAAAATTAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTCATTACATCCAAGTTTGGAAAACAGTGGCTATTTCAGTGGCTCTTATTCAAGCTTTC
CATCAAATCTTGTAAACTCCGGACCAAGTCAAGATTTTTCTGCCTTGAGGATAAGTCCCT
ACCATTGTGCAATGAATACCGAAAAAGACAGATTACTTACTTTCCAGATGTGGCCATTGA
CCTTTCTGTCGCCAGCAGATCTGGCAAAAGCAGGCTTTTACTACATAGGACCTGGAGACA
GAGTGGCTTGCTTTGCCTGTGGTGGAAAATTGAGCAATTGGGAACCAAAGGATGATGCTA
TGACAGAACACTTACGACATTTCCCCAACTGCCCATTTTTGGGAAATCAGCTTCAAGACT
CTTCAAGATACACTGTTTCTAACCTGAGCATGCAGACATATGCAGCCCGCTTTAAAACAT
TCTGTAACTGGCCTTCTAGTATTCCAGTTCATCCTGAACAGCTTGCAAGTGCAGGTTTTT
ATTATATGGGTCACAGTGATGATGTGAAGTGCTTCTGCTGTGATGGTGGGCTGAGGTGTT
GGGAATCTGGAGATGATCCATGGGTGGAACATGCCAAGTGGTTTCCAAGGTGTGAGTACT
TGATACGAATTAAAGGACAGGAGTTCATCAGTCGCGTTCAAGCCAGTTACCCTCATCTAC
TTGAACAGCTATTGTCTACTTCAGACAATCCAGAAGATGAAAATGCAGAGCCACCAATTG
TTCATTTTGGACCTGGAGAAAACCATTCAGAAGATGCAGTCATGATGAATACACCTGTGG
TTAAAGCAGCTTTGGAAATGGGTTTTAGTAGAAGGCTTGTAAAGCAGACAGTTCAGAGTA
AAATCCTAACAACTGGAGAGAATTATAAAACCATCAGTGATCTTGTATTAGATTTACTTA
ATGCAGAAGATGAAATAAGGGAAGAGGAGAAAGAAAGAGCAACTGAAGAAAAAGAATCAG
ATGACCTATCATTGATCCGGAAGAACAGAATGGCACTTTTTCAACACTTGACTTGTGTGC
TTCCAATCCTGGATAGTCTACTAATTGCCAGAGTGATTAGTGAACAAGAACATGATGTTA
TTAAACAGAAAACACAGACATCTTTACAAGCAAGAGAACTGATTGATATTATTTTAGTAA
AAGGAAATTATGCAGCCACCATATTCAAAAACTCTCTACAAGAAATCGATCCCATGTTAT
ACAAGCATTTATTTGTGCAACAAGACATAAAGTATATTCCCACAGAAAATGTTTCAGATT
TATCAATGGAAGAACAATTAAGGAGACTACAGGAAGAAAGAACATGCAAAGTGTGTATGG
ACAAAGAAGTGTCCATAGTGTTTATTCCGTGTGGTCATCTGGTAGTCTGCAAAGATTGTG
CCCCTTCTCTAAGAAAATGTCCTATTTGTAGAGGTACAATCAAGGGTACAGTTCGTACAT
TTCTTTCATGAAGATCTAAAACTTTGCCTAAACTTTAGAACTAATGGATTAAATGTATTG
TAATCTTAACTTTGATACTGCTTTGGTTTCTTTAAATTTTTTATTTATTTACAACTCAGA
AAATTTTGTTTTATATAAATGTATTTATATAAATATATATCTAAAACATGAACATATATA
TTTTATATCGTAAGGGAATGATAGGATTTTGTTCTTGTGAACAAAGAATAGGGAAAGCAC
TACAAGCATAATACTAAATGAAAATTATAGTACTATTGATATTGTAACTGAAGTAAAAAT
TTTTTTGAACTGATCTTTCAGAATTTTCAGTATTTTGGAGAAACATGGATTCTCTTGCTT
TATCTATCCCTGTCTTATACATAGAAGGTCTTGATGTTTGTTGAATGACTTTTTCAGGAC
ATGATGTTTTTGTAAAGAATTCTGTTAAGCAACATTTTAATAAAGCGATCAAAATTAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|52854081|gb|AAU88144.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|52854081|gb|AAU88144.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               502-621, + strand, RNAz p=0.554642

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               502-621, + strand, RNAz p=0.554642

Aligned organism(s): 7 entry(ies)

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Aligned organism(s): 7 entry(ies)

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               1-227, gnl|bosTau2|chr26 (17927094-17926868)
               

               
               1-227, gnl|Hg17|chr11 (101726205-101726416)
               

               
               1-227, gnl|Mm7|chr9 (7857953-7857748)
               


               
               462-953, gnl|bosTau2|chr26 (17926192-17925701)
               


               
               979-1452, gnl|bosTau2|chr26 (17922038-17921594)
               

               
               979-1452, gnl|Hg17|chr11 (101711925-101713044)
               

               
               979-1452, gnl|Mm7|chrUn_random (8952755-8953549)

Aligned organism(s): 7 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-227, gnl|bosTau2|chr26 (17927094-17926868)
               

               
               1-227, gnl|Hg17|chr11 (101726205-101726416)
               

               
               1-227, gnl|Mm7|chr9 (7857953-7857748)
               


               
               462-953, gnl|bosTau2|chr26 (17926192-17925701)
               


               
               979-1452, gnl|bosTau2|chr26 (17922038-17921594)
               

               
               979-1452, gnl|Hg17|chr11 (101711925-101713044)
               

               
               979-1452, gnl|Mm7|chrUn_random (8952755-8953549)

Expressed library(ies): 27 entry(ies)

More info

Expressed library(ies): 27 entry(ies)

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               liv (1.75541)
               

               
               lin (1.16482)
               

               
               mgp (0.692042)
               

               
               fty (0.527519)
               

               
               kid (0.518941)
               

               
               tra (0.492368)
               

               
               mga (0.480615)
               

               
               fco (0.471624)
               

               
               hea (0.408998)
               

               
               lun (0.300978)
               

               
               isp (0.300752)
               

               
               ste (0.270416)
               

               
               ret (0.257467)
               

               
               tes (0.207814)
               

               
               jej (0.197844)
               

               
               col (0.195008)
               

               
               mgm (0.180343)
               

               
               eye (0.170503)
               

               
               tbr (0.154178)
               

               
               ctl (0.153069)
               

               
               bfe (0.149858)
               

               
               lnt (0.142308)
               

               
               ute (0.132784)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               cbl (0.114797)
               

               
               jca (0.11396)

Expressed library(ies): 27 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (1.75541)
               

               
               lin (1.16482)
               

               
               mgp (0.692042)
               

               
               fty (0.527519)
               

               
               kid (0.518941)
               

               
               tra (0.492368)
               

               
               mga (0.480615)
               

               
               fco (0.471624)
               

               
               hea (0.408998)
               

               
               lun (0.300978)
               

               
               isp (0.300752)
               

               
               ste (0.270416)
               

               
               ret (0.257467)
               

               
               tes (0.207814)
               

               
               jej (0.197844)
               

               
               col (0.195008)
               

               
               mgm (0.180343)
               

               
               eye (0.170503)
               

               
               tbr (0.154178)
               

               
               ctl (0.153069)
               

               
               bfe (0.149858)
               

               
               lnt (0.142308)
               

               
               ute (0.132784)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               cbl (0.114797)
               

               
               jca (0.11396)

	1-227, gnl\|bosTau2\|chr26 (17927094-17926868)
	1-227, gnl\|Hg17\|chr11 (101726205-101726416)
	1-227, gnl\|Mm7\|chr9 (7857953-7857748)

	462-953, gnl\|bosTau2\|chr26 (17926192-17925701)

	979-1452, gnl\|bosTau2\|chr26 (17922038-17921594)
	979-1452, gnl\|Hg17\|chr11 (101711925-101713044)
	979-1452, gnl\|Mm7\|chrUn_random (8952755-8953549)

	liv (1.75541)
	lin (1.16482)
	mgp (0.692042)
	fty (0.527519)
	kid (0.518941)
	tra (0.492368)
	mga (0.480615)
	fco (0.471624)
	hea (0.408998)
	lun (0.300978)
	isp (0.300752)
	ste (0.270416)
	ret (0.257467)
	tes (0.207814)
	jej (0.197844)
	col (0.195008)
	mgm (0.180343)
	eye (0.170503)
	tbr (0.154178)
	ctl (0.153069)
	bfe (0.149858)
	lnt (0.142308)
	ute (0.132784)
	sug (0.127291)
	bla (0.124347)
	cbl (0.114797)
	jca (0.11396)