Non-Coding RNA Search

Ss1.1-rpfco0111_h16.5

Sequence:


               
               ATCAGCGTAAGCTCTTTCAAGACAAAGCATCTCAGCTTCAAACTGGACTTGCAATCAATA
GAATTTTAATGGCTTCAGCGTCAAATCCAAAGTGCTCCAAGGAAAAGAAGAAATCTTCAA
AGAAAACTAAATGTTTAAAGAGAGGACCACCTCAGCAAATTTATTCCAAGTTTGGATCAC
TGCCTGTTGTGGCTGAGAAGTCTGCCAGTGCAAGCCATTCTGTGAATGCAAGTACACAGA
ACCTCCTGCAGACTATGCAACATTATGGGCCACATATCCTTCAGAAACCAGCTAAAGTTA
TTGAACCTAGATATCTCTACAAGCCTTCTAGAACAACTTCTCAATGTAAGGCCATACCTT
CTGACTCAGAAAAGTCCATTTCCATTTGTGACAATTTGTCTGAACTTTTGATGGCGATGC
AAGATGAGCTGGACCAAATGAGTATAGAGTACCAAGAACTACTGAGTCAAATGAAAGAAA
CTGAAAGCCAGTCAGTCTGTGAAGACATAGAATGTGAACTAGAGCATTTAGTCAAGAAAA
TGGAAATTAAAGGAGAACGAATTTCCAAACTAATGAAGCATCAAGACAGTGTTCGTAAAC
TTCAGCAAAAAGTTCAAAGTTCAAAGATGAGTGAAGCTTCAGCTATTCAGCAAGAAGATA
GCAACCTGAAAGGATCAAAGAACATTAAAAATAGCCCTAGAAAATGTTTACTAACTAATT
CTCTTCAAAAGAACAGCAGCTTTCATCCAATACGAGTCCATAACCTTCAAATGAAATTGA
GAAGAGATGATATCTTGTGGGAACAGTAACACAGTAGCAAAACTATCCCCTTAAATGAAC
TCTGTCATTGAGATCCTGAACTGTCTAAAGTGCTTTTAATTCAATATACCTTTATGAAAT
TTTGAATTATGTTTCTAGCCTTTATAAATTGTAGTATTTTTTAAATTAATGCCTGATGAC
CTCCGAAGAGTCCCAAATAATCAATGATTGCTTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCAGCGTAAGCTCTTTCAAGACAAAGCATCTCAGCTTCAAACTGGACTTGCAATCAATA
GAATTTTAATGGCTTCAGCGTCAAATCCAAAGTGCTCCAAGGAAAAGAAGAAATCTTCAA
AGAAAACTAAATGTTTAAAGAGAGGACCACCTCAGCAAATTTATTCCAAGTTTGGATCAC
TGCCTGTTGTGGCTGAGAAGTCTGCCAGTGCAAGCCATTCTGTGAATGCAAGTACACAGA
ACCTCCTGCAGACTATGCAACATTATGGGCCACATATCCTTCAGAAACCAGCTAAAGTTA
TTGAACCTAGATATCTCTACAAGCCTTCTAGAACAACTTCTCAATGTAAGGCCATACCTT
CTGACTCAGAAAAGTCCATTTCCATTTGTGACAATTTGTCTGAACTTTTGATGGCGATGC
AAGATGAGCTGGACCAAATGAGTATAGAGTACCAAGAACTACTGAGTCAAATGAAAGAAA
CTGAAAGCCAGTCAGTCTGTGAAGACATAGAATGTGAACTAGAGCATTTAGTCAAGAAAA
TGGAAATTAAAGGAGAACGAATTTCCAAACTAATGAAGCATCAAGACAGTGTTCGTAAAC
TTCAGCAAAAAGTTCAAAGTTCAAAGATGAGTGAAGCTTCAGCTATTCAGCAAGAAGATA
GCAACCTGAAAGGATCAAAGAACATTAAAAATAGCCCTAGAAAATGTTTACTAACTAATT
CTCTTCAAAAGAACAGCAGCTTTCATCCAATACGAGTCCATAACCTTCAAATGAAATTGA
GAAGAGATGATATCTTGTGGGAACAGTAACACAGTAGCAAAACTATCCCCTTAAATGAAC
TCTGTCATTGAGATCCTGAACTGTCTAAAGTGCTTTTAATTCAATATACCTTTATGAAAT
TTTGAATTATGTTTCTAGCCTTTATAAATTGTAGTATTTTTTAAATTAATGCCTGATGAC
CTCCGAAGAGTCCCAAATAATCAATGATTGCTTTTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61841387|ref|XP_586297.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61841387|ref|XP_586297.1|

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               198-445, gnl|bosTau2|chr9 (22783593-22783837)
               

               
               198-445, gnl|Hg17|chr6 (109587112-109587358)
               

               
               198-445, gnl|Mm7|chr10 (41534012-41533545)
               


               
               591-994, gnl|bosTau2|chr9 (22787132-22787542)
               

               
               591-994, gnl|canFam2|chr12 (69161462-69161761)
               

               
               591-994, gnl|dasNov1|scaffold_44208 (3479-3779)
               

               
               591-994, gnl|echTel1|scaffold_312927 (7246-7548)
               

               
               591-994, gnl|galGal2|chr3 (65450855-65450552)
               

               
               591-994, gnl|hg17|chr6 (109590630-109590931)
               

               
               591-994, gnl|Hg17|chr6 (109590645-109591056)
               

               
               591-994, gnl|loxAfr1|scaffold_64693 (26510-26812)
               

               
               591-994, gnl|mm7|chr10 (41530585-41530293)
               

               
               591-994, gnl|Mm7|chr10 (41530568-41530166)
               

               
               591-994, gnl|monDom2|scaffold_0 (111160030-111159714)
               

               
               591-994, gnl|panTro1|chr5 (111900727-111901030)
               

               
               591-994, gnl|rheMac2|chr4 (154736285-154735984)
               

               
               591-994, gnl|rn3|chr20 (45753649-45753362)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               198-445, gnl|bosTau2|chr9 (22783593-22783837)
               

               
               198-445, gnl|Hg17|chr6 (109587112-109587358)
               

               
               198-445, gnl|Mm7|chr10 (41534012-41533545)
               


               
               591-994, gnl|bosTau2|chr9 (22787132-22787542)
               

               
               591-994, gnl|canFam2|chr12 (69161462-69161761)
               

               
               591-994, gnl|dasNov1|scaffold_44208 (3479-3779)
               

               
               591-994, gnl|echTel1|scaffold_312927 (7246-7548)
               

               
               591-994, gnl|galGal2|chr3 (65450855-65450552)
               

               
               591-994, gnl|hg17|chr6 (109590630-109590931)
               

               
               591-994, gnl|Hg17|chr6 (109590645-109591056)
               

               
               591-994, gnl|loxAfr1|scaffold_64693 (26510-26812)
               

               
               591-994, gnl|mm7|chr10 (41530585-41530293)
               

               
               591-994, gnl|Mm7|chr10 (41530568-41530166)
               

               
               591-994, gnl|monDom2|scaffold_0 (111160030-111159714)
               

               
               591-994, gnl|panTro1|chr5 (111900727-111901030)
               

               
               591-994, gnl|rheMac2|chr4 (154736285-154735984)
               

               
               591-994, gnl|rn3|chr20 (45753649-45753362)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               thg (0.253582)
               

               
               fco (0.157208)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.253582)
               

               
               fco (0.157208)

	198-445, gnl\|bosTau2\|chr9 (22783593-22783837)
	198-445, gnl\|Hg17\|chr6 (109587112-109587358)
	198-445, gnl\|Mm7\|chr10 (41534012-41533545)

	591-994, gnl\|bosTau2\|chr9 (22787132-22787542)
	591-994, gnl\|canFam2\|chr12 (69161462-69161761)
	591-994, gnl\|dasNov1\|scaffold_44208 (3479-3779)
	591-994, gnl\|echTel1\|scaffold_312927 (7246-7548)
	591-994, gnl\|galGal2\|chr3 (65450855-65450552)
	591-994, gnl\|hg17\|chr6 (109590630-109590931)
	591-994, gnl\|Hg17\|chr6 (109590645-109591056)
	591-994, gnl\|loxAfr1\|scaffold_64693 (26510-26812)
	591-994, gnl\|mm7\|chr10 (41530585-41530293)
	591-994, gnl\|Mm7\|chr10 (41530568-41530166)
	591-994, gnl\|monDom2\|scaffold_0 (111160030-111159714)
	591-994, gnl\|panTro1\|chr5 (111900727-111901030)
	591-994, gnl\|rheMac2\|chr4 (154736285-154735984)
	591-994, gnl\|rn3\|chr20 (45753649-45753362)