Non-Coding RNA Search

Ss1.1-rpfco0113_b12.5

Sequence:


               
               CACTAAGTGGAAGTCCAAGAAGGCGTGAAACAAGGCAAGGATGTCCATAGGCTTATGTAA
AGGGTCAGGCTGCTGTCCTCTAGTCCATGGCAATGCTTAGCGACAAGTAATCCTTACCCG
CGCTAAAGGCCTGTTCCATCCTCTTTCCTGACATCCTCATGGCACCTTGACATTCCATGT
CATTCAGAGACAAAGAGAGCCTGACCACCCCAATGCCTACTAGGAACAAACAGCAAGCAG
AATTCACTTTGAAAGCACCAGTGATTCCATTATATCGAGAACTATAATACCAAAATGTAG
TAGAAAATGAATATAAGCGCTAAGCAACTCATCTGGATTGTATTATCATTTAGCTCATCA
TAAAACTCTAATAATTTCGGATTATTTTTAGTGATCTTAAGCCAAAATTGTAAAGCTGCC
ACAACATTACTGAAGATACACACACTTTCTGTTTTGCAGAAATATCACAAAGACCAAGAG
GCGAGAGTAGGAGGAAAATTGCAACTGTCTTTGCAACAATAAATCAGGTATCTATTCTGG
TGTAGAGATAGGATGTTGAAAGCTGCCCTGCTATCACCAGTGTAGAAAATAAGAGTAGTA
CAATACATGTACACTGAAATTTGCCATCGCGTGTTTGTGTAAACTCAACGTGCACATTTT
GTATTTCGAGAAGAAAAAAAATAAAAGCAAATAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACTAAGTGGAAGTCCAAGAAGGCGTGAAACAAGGCAAGGATGTCCATAGGCTTATGTAA
AGGGTCAGGCTGCTGTCCTCTAGTCCATGGCAATGCTTAGCGACAAGTAATCCTTACCCG
CGCTAAAGGCCTGTTCCATCCTCTTTCCTGACATCCTCATGGCACCTTGACATTCCATGT
CATTCAGAGACAAAGAGAGCCTGACCACCCCAATGCCTACTAGGAACAAACAGCAAGCAG
AATTCACTTTGAAAGCACCAGTGATTCCATTATATCGAGAACTATAATACCAAAATGTAG
TAGAAAATGAATATAAGCGCTAAGCAACTCATCTGGATTGTATTATCATTTAGCTCATCA
TAAAACTCTAATAATTTCGGATTATTTTTAGTGATCTTAAGCCAAAATTGTAAAGCTGCC
ACAACATTACTGAAGATACACACACTTTCTGTTTTGCAGAAATATCACAAAGACCAAGAG
GCGAGAGTAGGAGGAAAATTGCAACTGTCTTTGCAACAATAAATCAGGTATCTATTCTGG
TGTAGAGATAGGATGTTGAAAGCTGCCCTGCTATCACCAGTGTAGAAAATAAGAGTAGTA
CAATACATGTACACTGAAATTTGCCATCGCGTGTTTGTGTAAACTCAACGTGCACATTTT
GTATTTCGAGAAGAAAAAAAATAAAAGCAAATAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               528-647, - strand, RNAz p=0.84374

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               528-647, - strand, RNAz p=0.84374

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               1-696, gnl|bosTau2|chr6 (17856965-17857651)
               

               
               1-696, gnl|canFam2|chr3 (91722185-91721708)
               

               
               1-696, gnl|dasNov1|scaffold_7889 (10275-10754)
               

               
               1-696, gnl|echTel1|scaffold_243453 (3905-3450)
               

               
               1-696, gnl|galGal2|chr4 (75292978-75292506)
               

               
               1-696, gnl|hg17|chr4 (20406514-20406978)
               

               
               1-696, gnl|Hg17|chr4 (20407207-20406512)
               

               
               1-696, gnl|loxAfr1|scaffold_25554 (25401-24940)
               

               
               1-696, gnl|mm7|chr5 (47715396-47715860)
               

               
               1-696, gnl|Mm7|chr5 (47716083-47715394)
               

               
               1-696, gnl|monDom2|scaffold_10 (18507905-18507422)
               

               
               1-696, gnl|oryCun1|scaffold_179930 (34403-33933)
               

               
               1-696, gnl|panTro1|chr3 (20877982-20878466)
               

               
               1-696, gnl|rheMac2|chr5 (15514169-15514635)
               

               
               1-696, gnl|rn3|chr14 (67456260-67455799)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-696, gnl|bosTau2|chr6 (17856965-17857651)
               

               
               1-696, gnl|canFam2|chr3 (91722185-91721708)
               

               
               1-696, gnl|dasNov1|scaffold_7889 (10275-10754)
               

               
               1-696, gnl|echTel1|scaffold_243453 (3905-3450)
               

               
               1-696, gnl|galGal2|chr4 (75292978-75292506)
               

               
               1-696, gnl|hg17|chr4 (20406514-20406978)
               

               
               1-696, gnl|Hg17|chr4 (20407207-20406512)
               

               
               1-696, gnl|loxAfr1|scaffold_25554 (25401-24940)
               

               
               1-696, gnl|mm7|chr5 (47715396-47715860)
               

               
               1-696, gnl|Mm7|chr5 (47716083-47715394)
               

               
               1-696, gnl|monDom2|scaffold_10 (18507905-18507422)
               

               
               1-696, gnl|oryCun1|scaffold_179930 (34403-33933)
               

               
               1-696, gnl|panTro1|chr3 (20877982-20878466)
               

               
               1-696, gnl|rheMac2|chr5 (15514169-15514635)
               

               
               1-696, gnl|rn3|chr14 (67456260-67455799)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

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               cbe (0.478469)
               

               
               fco (0.471624)
               

               
               ret (0.3862)
               

               
               hyp (0.142837)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.478469)
               

               
               fco (0.471624)
               

               
               ret (0.3862)
               

               
               hyp (0.142837)

	1-696, gnl\|bosTau2\|chr6 (17856965-17857651)
	1-696, gnl\|canFam2\|chr3 (91722185-91721708)
	1-696, gnl\|dasNov1\|scaffold_7889 (10275-10754)
	1-696, gnl\|echTel1\|scaffold_243453 (3905-3450)
	1-696, gnl\|galGal2\|chr4 (75292978-75292506)
	1-696, gnl\|hg17\|chr4 (20406514-20406978)
	1-696, gnl\|Hg17\|chr4 (20407207-20406512)
	1-696, gnl\|loxAfr1\|scaffold_25554 (25401-24940)
	1-696, gnl\|mm7\|chr5 (47715396-47715860)
	1-696, gnl\|Mm7\|chr5 (47716083-47715394)
	1-696, gnl\|monDom2\|scaffold_10 (18507905-18507422)
	1-696, gnl\|oryCun1\|scaffold_179930 (34403-33933)
	1-696, gnl\|panTro1\|chr3 (20877982-20878466)
	1-696, gnl\|rheMac2\|chr5 (15514169-15514635)
	1-696, gnl\|rn3\|chr14 (67456260-67455799)