Non-Coding RNA Search

Ss1.1-rpfco0113_d4.5

Sequence:


               
               ATTTGCCTCTCAAACACACATTCTCATTATCACTAAGTGGACCGCTGAGGGGTCTATAGT
TCCTGGAACCCCCTTTGCCTCCATAAGGACAGAGAAGAATGGCCAAGTGCAGCTGGGACC
ACTGAGTGCCCTTCTCTTTTCACGAGAGGAGCAAAACTTGGGCGATCCTCTGAGGATACA
AAACACGTTCATTTTCAGTGGCTTCTCCAATGAATGGAGAGAAGGGATGTGAATGTGGGC
AGGCACATGTTTTCTTTTTTCTGAAAAATGTGGTTTCTTCAATTCCTGTCAAATTCAGGA
TAGAAACCTTCCTGAAAGCAAGCTAGCTTTTAGGCGGAATCCCCTCTGAAGATTCTCATG
TGTCCAGAATGAAAGATAAGAATAATTGTTTCCCTCATGTTTCCCAATCCCCATTCGTCT
AAGGTCATGTCACTCAGAGCATCTATAGCACATAGTGTTTAAAGACTAATGAACGAAAAA
AAAAAAAAAAGAGATAAAAATGTCAACTAATTTGGGGGTGGTTTTCTTCTATATGGTACT
AGGAAATGCCTTGGTGGCAAAGCACATTTTGAGTAGTTGAAATATTTTGTTTTCTAAGCT
TTCTTACAATGTGGACTGATTACTTTAACATGTGTAAAATAACTGTCATGTGTAAAATAA
CTGGATGTTCTTTATATACTGGAAATAATCTGTAAATCCAATATGTCACTAAGTGTTTTA
ACCTTTATGTATATATCTCTCATCAATAAATGTGGATTCCAATTTCAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTGCCTCTCAAACACACATTCTCATTATCACTAAGTGGACCGCTGAGGGGTCTATAGT
TCCTGGAACCCCCTTTGCCTCCATAAGGACAGAGAAGAATGGCCAAGTGCAGCTGGGACC
ACTGAGTGCCCTTCTCTTTTCACGAGAGGAGCAAAACTTGGGCGATCCTCTGAGGATACA
AAACACGTTCATTTTCAGTGGCTTCTCCAATGAATGGAGAGAAGGGATGTGAATGTGGGC
AGGCACATGTTTTCTTTTTTCTGAAAAATGTGGTTTCTTCAATTCCTGTCAAATTCAGGA
TAGAAACCTTCCTGAAAGCAAGCTAGCTTTTAGGCGGAATCCCCTCTGAAGATTCTCATG
TGTCCAGAATGAAAGATAAGAATAATTGTTTCCCTCATGTTTCCCAATCCCCATTCGTCT
AAGGTCATGTCACTCAGAGCATCTATAGCACATAGTGTTTAAAGACTAATGAACGAAAAA
AAAAAAAAAAGAGATAAAAATGTCAACTAATTTGGGGGTGGTTTTCTTCTATATGGTACT
AGGAAATGCCTTGGTGGCAAAGCACATTTTGAGTAGTTGAAATATTTTGTTTTCTAAGCT
TTCTTACAATGTGGACTGATTACTTTAACATGTGTAAAATAACTGTCATGTGTAAAATAA
CTGGATGTTCTTTATATACTGGAAATAATCTGTAAATCCAATATGTCACTAAGTGTTTTA
ACCTTTATGTATATATCTCTCATCAATAAATGTGGATTCCAATTTCAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               3-645, gnl|bosTau2|chr15 (39878129-39878763)
               

               
               3-645, gnl|Hg17|chr11 (35230066-35229431)
               

               
               3-645, gnl|Mm7|chr2 (102640928-102641459)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-645, gnl|bosTau2|chr15 (39878129-39878763)
               

               
               3-645, gnl|Hg17|chr11 (35230066-35229431)
               

               
               3-645, gnl|Mm7|chr2 (102640928-102641459)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               fco (2.20091)
               

               
               spc (0.906927)
               

               
               fbs (0.526039)
               

               
               fhi (0.508733)
               

               
               sag (0.36543)
               

               
               mgp (0.230681)
               

               
               lun (0.150489)
               

               
               hyp (0.142837)
               

               
               ret (0.128733)
               

               
               nbm (0.0993246)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (2.20091)
               

               
               spc (0.906927)
               

               
               fbs (0.526039)
               

               
               fhi (0.508733)
               

               
               sag (0.36543)
               

               
               mgp (0.230681)
               

               
               lun (0.150489)
               

               
               hyp (0.142837)
               

               
               ret (0.128733)
               

               
               nbm (0.0993246)

	3-645, gnl\|bosTau2\|chr15 (39878129-39878763)
	3-645, gnl\|Hg17\|chr11 (35230066-35229431)
	3-645, gnl\|Mm7\|chr2 (102640928-102641459)

	fco (2.20091)
	spc (0.906927)
	fbs (0.526039)
	fhi (0.508733)
	sag (0.36543)
	mgp (0.230681)
	lun (0.150489)
	hyp (0.142837)
	ret (0.128733)
	nbm (0.0993246)