Non-Coding RNA Search

Ss1.1-rpfco0113_j24.5

Sequence:


               
               GAGCTTCGGAGCCAGTCAGCGGGCAGTCAGGTAACGGTGCCTGAGTCCCCTCAGGTCATG
GGAATTATGCTGTGTTTAGTCACCTGGTCTTTGTCTGTTGCACTGGGCACATCACATCTG
TTGAAATAATAAAACTAACTTTGAAAGTGAAACTTACCTTATTTAATAGTAGACTGTTGA
GAAGCTATAGTGCAATTCTAATGAGCATTATGTCTAGTTGCAAGCTTCCCATTACCACTA
TATATAACTGATATGTTTTTCCTTAATTTTGTTATTTAGGTTTTTTTGGTATGTTTTGTT
TTCTAATTGATTCTCAACTTGTAGTTCTTTTGTACAATGCAGTTCAAGGTACAGAAATTT
ATGGTTAGATTACTCTGTGTTATCTTTATTACTTTTATCCTTACTTCATTCATTGAATAG
ACAGGTGTGAAGCGTCTGCTGTTTGCTAGGCATTGTGGTAAATATCGGAGATATCATTGT
GAGCAGAATTAGATATGGCCTGTACTTTTGTAGTAAGTGTGATATTTAATGTTCGATGAC
AAGGCTGTCAGCCATTGAGCTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGCTTCGGAGCCAGTCAGCGGGCAGTCAGGTAACGGTGCCTGAGTCCCCTCAGGTCATG
GGAATTATGCTGTGTTTAGTCACCTGGTCTTTGTCTGTTGCACTGGGCACATCACATCTG
TTGAAATAATAAAACTAACTTTGAAAGTGAAACTTACCTTATTTAATAGTAGACTGTTGA
GAAGCTATAGTGCAATTCTAATGAGCATTATGTCTAGTTGCAAGCTTCCCATTACCACTA
TATATAACTGATATGTTTTTCCTTAATTTTGTTATTTAGGTTTTTTTGGTATGTTTTGTT
TTCTAATTGATTCTCAACTTGTAGTTCTTTTGTACAATGCAGTTCAAGGTACAGAAATTT
ATGGTTAGATTACTCTGTGTTATCTTTATTACTTTTATCCTTACTTCATTCATTGAATAG
ACAGGTGTGAAGCGTCTGCTGTTTGCTAGGCATTGTGGTAAATATCGGAGATATCATTGT
GAGCAGAATTAGATATGGCCTGTACTTTTGTAGTAAGTGTGATATTTAATGTTCGATGAC
AAGGCTGTCAGCCATTGAGCTTTT

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               8-265, gnl|bosTau2|chr9 (56052422-56052158)
               

               
               8-265, gnl|Hg17|chr6 (159368958-159368701)
               

               
               8-265, gnl|Mm7|chr17 (6444775-6444555)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-265, gnl|bosTau2|chr9 (56052422-56052158)
               

               
               8-265, gnl|Hg17|chr6 (159368958-159368701)
               

               
               8-265, gnl|Mm7|chr17 (6444775-6444555)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               cte (0.29274)
               

               
               aor (0.195274)
               

               
               fco (0.157208)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               cty (0.10408)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)
               

               
               aor (0.195274)
               

               
               fco (0.157208)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               cty (0.10408)

	8-265, gnl\|bosTau2\|chr9 (56052422-56052158)
	8-265, gnl\|Hg17\|chr6 (159368958-159368701)
	8-265, gnl\|Mm7\|chr17 (6444775-6444555)

	cte (0.29274)
	aor (0.195274)
	fco (0.157208)
	lin (0.145603)
	spl (0.143184)
	cty (0.10408)