Non-Coding RNA Search

Ss1.1-rpfco0113_l14.5

Sequence:


               
               CTGCACAAGCTGCAGCAGCTGCCCAGGCAGCAGCCGTGGCAGGAAACATCCCTGGCCCAG
GATCAGTAGGTGGAATAGCCCCAGCTATCAGTTTATCTGCTGCTGCTGGAATCGGTGTTG
ATGACCTTCGTCGCTTATGCATACTCAGGATGAGTTTTGTGAAAGGCTGGGGACCTGATT
ACCCAAGGCAGAGCATCAAGGAAACACCTTGCTGGATTGAGATTCACTTACACCGGGCCC
TCCAGCTCCTAGATGAAGTACTTCATACCATGCCTATTGCCGACCCACAGCCTTTAGACT
GAGGTCTTTTAACTGGTGGGGCCTTAACATTATCAGGATGGTGGACTATAAAATACAATC
CTGTTTGTAATCTAAAGATATATTTCACTTTTGTTCTGCTTAATCTTTTCATAAAGGGTT
AAAAAAATGTGTTTGCTGCCTTGCTCCCAGCAGACAGAAACTGGATTAAGACAATTTTTT
TTTCCCTATTTAGAACTTTTTGGGCATGGCTCATAGCTTGAAGATCAGGAAAAACACATT
CTCACTAAATCTTCACCAGTAATGTATGAAGGAATCATTCCAGTGCTGGAAAATTTAGCC
CTTTAAAATGTCTTAGAGCCATTTATATGCAGAACATCGATATGTGTGTTACTCTACAGA
ATAAATTCAATATTACTGATTTTAAAGGCAGAGAAGTTCTCAAAGTTAATTCACCTATGT
TATCTTGTGTGTGAGTTGTTATTGTTGAACATACTTTATTCCAAAATATTGTGCCATGTG
GGTGAGTTAATTTTACCAAGAGCAACTTTACTCTGTGTTTAAAAAATAAGATAGTAATGT
ATTATAACCTTTTATCCAAAATATTTTTTTGCAAGTTAAACTAGTGAAGATGATTTCAAT
TCAGATTGTCTCGCAACTTCAGTTTTATTTTTGCCAAGGCAAAACACTAATTTGTGTATA
TTGAGAATTCCTTAAAAATTATCAGACAAAGGAATATCATTTAAAATTACATTTGTTATC
TTTGTTGGATAACTATTTATCAAGAAATATACTTTTGCCCTATTAAACAATAGGTGTATT
CTGTATTTCTAGGCACAAGGTTGGTTACTAAAAAGCCTAGAAGAAGAATTTCTTTCCTTC
ATTAACATAGGGAAAGGTTTTGTATTTTTAAAAACACTAAAAGCAGTGTCACTCCACCTG
ATATCTCACCATTCTGCAAAGGTGGCAATGCTTAATCTAAGTAATGAGTATTTTGGAAAC
TGCTAAATTCTATGTTAAATACTGTGCAGAATAATGGAAACATTACCATTCATAATAGGT
AGTTTGGATATTTTTGTACTTGATTTGATGTGTGACTTTTTTTTCATATGCTGTTTAAAT
CATGTATGTTATGACATCGTTTAAAATTCAGTTTTTGTATCTTGGGGCAAGACTGCAAAC
TTTTTTATACCTTTTGGTTATTCTAAGCCCTTTGCCATCAATGATCATATCAATTGGCAG
TGACTTTGTATAGAAAATATAAGTAGAAAAATTGCAAGTGTATTGACTGTACCACAGACA
CAATATGTATGCTTTTTACTTAGCTAGTAGCATAAATAAAACTGAATCTCAACATGCAAA
GTTGAATTCTAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGCACAAGCTGCAGCAGCTGCCCAGGCAGCAGCCGTGGCAGGAAACATCCCTGGCCCAG
GATCAGTAGGTGGAATAGCCCCAGCTATCAGTTTATCTGCTGCTGCTGGAATCGGTGTTG
ATGACCTTCGTCGCTTATGCATACTCAGGATGAGTTTTGTGAAAGGCTGGGGACCTGATT
ACCCAAGGCAGAGCATCAAGGAAACACCTTGCTGGATTGAGATTCACTTACACCGGGCCC
TCCAGCTCCTAGATGAAGTACTTCATACCATGCCTATTGCCGACCCACAGCCTTTAGACT
GAGGTCTTTTAACTGGTGGGGCCTTAACATTATCAGGATGGTGGACTATAAAATACAATC
CTGTTTGTAATCTAAAGATATATTTCACTTTTGTTCTGCTTAATCTTTTCATAAAGGGTT
AAAAAAATGTGTTTGCTGCCTTGCTCCCAGCAGACAGAAACTGGATTAAGACAATTTTTT
TTTCCCTATTTAGAACTTTTTGGGCATGGCTCATAGCTTGAAGATCAGGAAAAACACATT
CTCACTAAATCTTCACCAGTAATGTATGAAGGAATCATTCCAGTGCTGGAAAATTTAGCC
CTTTAAAATGTCTTAGAGCCATTTATATGCAGAACATCGATATGTGTGTTACTCTACAGA
ATAAATTCAATATTACTGATTTTAAAGGCAGAGAAGTTCTCAAAGTTAATTCACCTATGT
TATCTTGTGTGTGAGTTGTTATTGTTGAACATACTTTATTCCAAAATATTGTGCCATGTG
GGTGAGTTAATTTTACCAAGAGCAACTTTACTCTGTGTTTAAAAAATAAGATAGTAATGT
ATTATAACCTTTTATCCAAAATATTTTTTTGCAAGTTAAACTAGTGAAGATGATTTCAAT
TCAGATTGTCTCGCAACTTCAGTTTTATTTTTGCCAAGGCAAAACACTAATTTGTGTATA
TTGAGAATTCCTTAAAAATTATCAGACAAAGGAATATCATTTAAAATTACATTTGTTATC
TTTGTTGGATAACTATTTATCAAGAAATATACTTTTGCCCTATTAAACAATAGGTGTATT
CTGTATTTCTAGGCACAAGGTTGGTTACTAAAAAGCCTAGAAGAAGAATTTCTTTCCTTC
ATTAACATAGGGAAAGGTTTTGTATTTTTAAAAACACTAAAAGCAGTGTCACTCCACCTG
ATATCTCACCATTCTGCAAAGGTGGCAATGCTTAATCTAAGTAATGAGTATTTTGGAAAC
TGCTAAATTCTATGTTAAATACTGTGCAGAATAATGGAAACATTACCATTCATAATAGGT
AGTTTGGATATTTTTGTACTTGATTTGATGTGTGACTTTTTTTTCATATGCTGTTTAAAT
CATGTATGTTATGACATCGTTTAAAATTCAGTTTTTGTATCTTGGGGCAAGACTGCAAAC
TTTTTTATACCTTTTGGTTATTCTAAGCCCTTTGCCATCAATGATCATATCAATTGGCAG
TGACTTTGTATAGAAAATATAAGTAGAAAAATTGCAAGTGTATTGACTGTACCACAGACA
CAATATGTATGCTTTTTACTTAGCTAGTAGCATAAATAAAACTGAATCTCAACATGCAAA
GTTGAATTCTAG

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               250-484, - strand, RNAz p=0.635712
               

               
               682-801, - strand, RNAz p=0.832276
               

               
               1401-1632, + strand, RNAz p=0.750803

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               250-484, - strand, RNAz p=0.635712
               

               
               682-801, - strand, RNAz p=0.832276
               

               
               1401-1632, + strand, RNAz p=0.750803

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               1569-1631, + strand, RNAmicro p=0.987217

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               1569-1631, + strand, RNAmicro p=0.987217

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               91-1632, gnl|bosTau2|chr24 (33017171-33018715)
               

               
               91-1632, gnl|Hg17|chr18 (46858624-46860161)
               

               
               91-1632, gnl|Mm7|chr18 (74034805-74033333)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               91-1632, gnl|bosTau2|chr24 (33017171-33018715)
               

               
               91-1632, gnl|Hg17|chr18 (46858624-46860161)
               

               
               91-1632, gnl|Mm7|chr18 (74034805-74033333)

Expressed library(ies): 19 entry(ies)

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Expressed library(ies): 19 entry(ies)

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               sin (0.349895)
               

               
               sme (0.305437)
               

               
               liv (0.292569)
               

               
               kid (0.259471)
               

               
               eru (0.240096)
               

               
               ecc (0.23007)
               

               
               cty (0.20816)
               

               
               aor (0.195274)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               bfe (0.149858)
               

               
               lin (0.145603)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               ret (0.128733)
               

               
               cbl (0.114797)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (0.349895)
               

               
               sme (0.305437)
               

               
               liv (0.292569)
               

               
               kid (0.259471)
               

               
               eru (0.240096)
               

               
               ecc (0.23007)
               

               
               cty (0.20816)
               

               
               aor (0.195274)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               bfe (0.149858)
               

               
               lin (0.145603)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               ret (0.128733)
               

               
               cbl (0.114797)

	250-484, - strand, RNAz p=0.635712
	682-801, - strand, RNAz p=0.832276
	1401-1632, + strand, RNAz p=0.750803

	91-1632, gnl\|bosTau2\|chr24 (33017171-33018715)
	91-1632, gnl\|Hg17\|chr18 (46858624-46860161)
	91-1632, gnl\|Mm7\|chr18 (74034805-74033333)

	sin (0.349895)
	sme (0.305437)
	liv (0.292569)
	kid (0.259471)
	eru (0.240096)
	ecc (0.23007)
	cty (0.20816)
	aor (0.195274)
	fty (0.17584)
	fbs (0.175346)
	eye (0.170503)
	fco (0.157208)
	tbr (0.154178)
	bfe (0.149858)
	lin (0.145603)
	ssp (0.13552)
	ste (0.135208)
	ret (0.128733)
	cbl (0.114797)