Non-Coding RNA Search

Ss1.1-rpfco0113_n9.5

Sequence:


               
               TGTTTAAAATTATGTGGTGCTCCGTATTGTGAGAGTTTAAGAATACTTTGAAGCATATGT
AGTATATGCATTGCTATTTGTATAAAATGTGTAAGGATTTGTGTATGTATGAGAGCAAGA
GAGAGGAACTCAAGGGAGTTTCTTGTTTATCTTAAGACCTGTTCATACTGGTATATTGGT
GACACTTCTCACCTTTCTGGTCTGGGGTTTCACACATGGCTCAGCTCAAGGCTTCATTTC
TTTTTCATTTGTACCCTCAAATTCTATAATGTAATGTTTTTAAAACTGTGATAAAATTAC
TATGTTTAACCTCTTGCATCGTCTGTTGCCAATTTGATAAAAATGATACCTTCCAACCAG
AAATGCCACCATGACTTGATTTGTGTTCAATTTCATATGTACAGCCTTTGTTTTGCTTGC
CTGTCTATGTTTCTTTTCTCTCCCTTTTCTGAATCACACTCCTATTTTGCTTTTTTTATA
TAAAGAAACAGCCTACAGAAGCAAAATCTTGTCTTCTCTGTGGATTCTTTAATTACTTTG
AGCCAGATCACTCTCCACTGTCTTCTTGGCACTTTCAGGATTTCTTAATGCTGATATATG
GATGGATTCTGTGAATTGAATTTTTGAAGCAAGTTCCTAAAACCTGTATCATTCTTGAAG
GTCACATGTACCTATTGTGAAAATGTGAAGCTGTATTTCTGAACCTGAAATAAATGATAA
CATTTGAAAAAAAAAAAAAAAAAACATTCTTATATATATTAGAGTCACGTCTATGCTTAT
CAAGATCTGAGACTTGTAAATATTTATAACTCCTTTGATACAGTTGGCCCAGAATTTCTA
ATACAGAGAATGTTAGCATTTGGCATTGCTGTCATTAATTTGGGAAAGGATGAGATTTTT
AAAGGGAGCAAATTGGACAAATTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTTTAAAATTATGTGGTGCTCCGTATTGTGAGAGTTTAAGAATACTTTGAAGCATATGT
AGTATATGCATTGCTATTTGTATAAAATGTGTAAGGATTTGTGTATGTATGAGAGCAAGA
GAGAGGAACTCAAGGGAGTTTCTTGTTTATCTTAAGACCTGTTCATACTGGTATATTGGT
GACACTTCTCACCTTTCTGGTCTGGGGTTTCACACATGGCTCAGCTCAAGGCTTCATTTC
TTTTTCATTTGTACCCTCAAATTCTATAATGTAATGTTTTTAAAACTGTGATAAAATTAC
TATGTTTAACCTCTTGCATCGTCTGTTGCCAATTTGATAAAAATGATACCTTCCAACCAG
AAATGCCACCATGACTTGATTTGTGTTCAATTTCATATGTACAGCCTTTGTTTTGCTTGC
CTGTCTATGTTTCTTTTCTCTCCCTTTTCTGAATCACACTCCTATTTTGCTTTTTTTATA
TAAAGAAACAGCCTACAGAAGCAAAATCTTGTCTTCTCTGTGGATTCTTTAATTACTTTG
AGCCAGATCACTCTCCACTGTCTTCTTGGCACTTTCAGGATTTCTTAATGCTGATATATG
GATGGATTCTGTGAATTGAATTTTTGAAGCAAGTTCCTAAAACCTGTATCATTCTTGAAG
GTCACATGTACCTATTGTGAAAATGTGAAGCTGTATTTCTGAACCTGAAATAAATGATAA
CATTTGAAAAAAAAAAAAAAAAAACATTCTTATATATATTAGAGTCACGTCTATGCTTAT
CAAGATCTGAGACTTGTAAATATTTATAACTCCTTTGATACAGTTGGCCCAGAATTTCTA
ATACAGAGAATGTTAGCATTTGGCATTGCTGTCATTAATTTGGGAAAGGATGAGATTTTT
AAAGGGAGCAAATTGGACAAATTA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-203, gnl|bosTau2|chr16 (28645907-28646108)
               

               
               1-203, gnl|Hg17|chr1 (169112761-169112971)
               

               
               1-203, gnl|Mm7|chr1 (161950642-161950450)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-203, gnl|bosTau2|chr16 (28645907-28646108)
               

               
               1-203, gnl|Hg17|chr1 (169112761-169112971)
               

               
               1-203, gnl|Mm7|chr1 (161950642-161950450)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

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               fco (0.471624)
               

               
               spc (0.340097)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               sug (0.127291)
               

               
               ebs (0.118301)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.471624)
               

               
               spc (0.340097)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               sug (0.127291)
               

               
               ebs (0.118301)

	1-203, gnl\|bosTau2\|chr16 (28645907-28646108)
	1-203, gnl\|Hg17\|chr1 (169112761-169112971)
	1-203, gnl\|Mm7\|chr1 (161950642-161950450)

	fco (0.471624)
	spc (0.340097)
	fcc (0.197785)
	fbs (0.175346)
	fhi (0.169578)
	sug (0.127291)
	ebs (0.118301)