Non-Coding RNA Search

Ss1.1-rpfco0113_p10.5

Sequence:


               
               CTCTAGATCAACCTCTCCATGTCGTTGAAACACATAGGCCATTTCGTTGAGGGAAAACAT
CCTGTCTTGAAGAATCCTGTTAAAACCTTGCTTACGCTTGTTAGAGTTAGAGGAAATCAT
GTTCTTTTTAAAAAGTTGCACATTTAGGAACTCAGTATATATGTACAGTTATACATACCT
CTCTCTATAAATAATCTGTATGTATAGTGAGTGTGGCTTAGTAACAGATCACAGCATGTC
TCCCACTCCAAGGGAAGTCACTTTACCTTCAGCGGTTACCGAGGGGCCAAACGCACTGCA
AACCAGCTTGCCCGACAACCCCAGGAAAAGTGTGTTTTCCAAAAGCCGTGTGTCCGGGAC
CAAGGGCAATGCTGTTGGCAGGAGCCGACCTCATTGTCCGTATTTTTCCCACCCGAAGTG
ATGATGGATGAGAAAAAGCACCCCTGGGTGACAAGAGGCCCGCCCTCCCCATTAGGATCC
TGTTAGGGGAAAACAGCAGCAGAGTCGTTGTTACAGGTGTACTATTGCTGTATTTTTAGG
GATTAATTTGTGTGGGGTGGAGAACACATTTAATGCTTTCCGTGACCGTTTAACTATAGG
TAAATGAAATATTTGCTTATTTATATTCAGAGATTTACCATGTCAAAGAGGTGTCTTGTA
TTTTCTTCTCATTTGTAATGTATCTTATTTATATATTAACGCAGTAAGTTCTGGAAACTG
TTTATGGTATTTTCGTGCACTTGTGAGCCAAAGAGAAAGATTAAAATTAGTGAGACTTGT
ATTTATATTAGAGTGCCCTTAAAATAATAATTTAAGCATAAGTTTACTGTCTGTAAGAGA
ACTCTGATTTTGTACATAATGTCATATATATGGAAATCCCACACTTGCATAGCATCTGCT
CTTCTATTACCCTCTCTGTCTGGCCGTATGTCTGGTGTTCTCTATGCTTTTTAGTAACCA
CTAGATGTAACTAGATCTCCTGTAATTTTGTAGTAGTTCATGACCAATCCCTGTGACTCG
CTTAGCTCAAACCTAAGGCAATGTTTCCGAAGACCGTCTGAAGATCTCAGATAAACTGAC
CAGGCTCACAACTGTTTTTGAAGAAAGGAAATTCACACTGTGCATTTTAGAGTATGCAAG
AAGAATATAAATAAATAAATAAATAAATAAATAAATAAATAAAATTCTCCATGGAGAATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCTAGATCAACCTCTCCATGTCGTTGAAACACATAGGCCATTTCGTTGAGGGAAAACAT
CCTGTCTTGAAGAATCCTGTTAAAACCTTGCTTACGCTTGTTAGAGTTAGAGGAAATCAT
GTTCTTTTTAAAAAGTTGCACATTTAGGAACTCAGTATATATGTACAGTTATACATACCT
CTCTCTATAAATAATCTGTATGTATAGTGAGTGTGGCTTAGTAACAGATCACAGCATGTC
TCCCACTCCAAGGGAAGTCACTTTACCTTCAGCGGTTACCGAGGGGCCAAACGCACTGCA
AACCAGCTTGCCCGACAACCCCAGGAAAAGTGTGTTTTCCAAAAGCCGTGTGTCCGGGAC
CAAGGGCAATGCTGTTGGCAGGAGCCGACCTCATTGTCCGTATTTTTCCCACCCGAAGTG
ATGATGGATGAGAAAAAGCACCCCTGGGTGACAAGAGGCCCGCCCTCCCCATTAGGATCC
TGTTAGGGGAAAACAGCAGCAGAGTCGTTGTTACAGGTGTACTATTGCTGTATTTTTAGG
GATTAATTTGTGTGGGGTGGAGAACACATTTAATGCTTTCCGTGACCGTTTAACTATAGG
TAAATGAAATATTTGCTTATTTATATTCAGAGATTTACCATGTCAAAGAGGTGTCTTGTA
TTTTCTTCTCATTTGTAATGTATCTTATTTATATATTAACGCAGTAAGTTCTGGAAACTG
TTTATGGTATTTTCGTGCACTTGTGAGCCAAAGAGAAAGATTAAAATTAGTGAGACTTGT
ATTTATATTAGAGTGCCCTTAAAATAATAATTTAAGCATAAGTTTACTGTCTGTAAGAGA
ACTCTGATTTTGTACATAATGTCATATATATGGAAATCCCACACTTGCATAGCATCTGCT
CTTCTATTACCCTCTCTGTCTGGCCGTATGTCTGGTGTTCTCTATGCTTTTTAGTAACCA
CTAGATGTAACTAGATCTCCTGTAATTTTGTAGTAGTTCATGACCAATCCCTGTGACTCG
CTTAGCTCAAACCTAAGGCAATGTTTCCGAAGACCGTCTGAAGATCTCAGATAAACTGAC
CAGGCTCACAACTGTTTTTGAAGAAAGGAAATTCACACTGTGCATTTTAGAGTATGCAAG
AAGAATATAAATAAATAAATAAATAAATAAATAAATAAATAAAATTCTCCATGGAGAATT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-559, gnl|bosTau2|chr2 (16427787-16427231)
               

               
               1-559, gnl|Hg17|chr2 (171541949-171542504)
               

               
               1-559, gnl|Mm7|chr10 (99007278-99007820)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-559, gnl|bosTau2|chr2 (16427787-16427231)
               

               
               1-559, gnl|Hg17|chr2 (171541949-171542504)
               

               
               1-559, gnl|Mm7|chr10 (99007278-99007820)

Expressed library(ies): 12 entry(ies)

More info

Expressed library(ies): 12 entry(ies)

Help | Less info


               
               fco (1.8865)
               

               
               ret (0.3862)
               

               
               fce (0.271592)
               

               
               cbe (0.239234)
               

               
               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               hyp (0.142837)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (1.8865)
               

               
               ret (0.3862)
               

               
               fce (0.271592)
               

               
               cbe (0.239234)
               

               
               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               hyp (0.142837)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)

	1-559, gnl\|bosTau2\|chr2 (16427787-16427231)
	1-559, gnl\|Hg17\|chr2 (171541949-171542504)
	1-559, gnl\|Mm7\|chr10 (99007278-99007820)

	fco (1.8865)
	ret (0.3862)
	fce (0.271592)
	cbe (0.239234)
	ece (0.229305)
	fcc (0.197785)
	eye (0.170503)
	fhi (0.169578)
	hyp (0.142837)
	ebs (0.118301)
	ecc (0.115035)
	spc (0.113366)