Non-Coding RNA Search

Ss1.1-rpfco0113_p4.5

Sequence:


               
               GGTAAGAAGGATGGCAACCGGGTAGAAAGTTTTAAACAAACAAGTTAAAAAAAAAAAAAA
CAAGTTATTGCAAAACTAGAAGTAGACAACAGCACACCAACAGGAATATATTTTTCTCTT
AAGTCTTTACCTACGTGGCAGCTTTTGAAATTCTCGGCAGCATTAAACAGTGTGTATGCA
AATTGCTATGGATGCCTTTCAGGGTCTAAGAAATTGGACAAGTGCTAACGAGGCCAACAG
TAAAAGGAATTACATCTGCCATTTGAAAAATAAGCATATGTATTCTACCATATTCACGAA
TAATATCTATCAAATGGTTTTCTTCCAATTATGAAATTCTACGACAACCTATGGTTGAAG
GAATGCTCGGTTTCATTTGCCAATAAATTGGTTTCTCATAACTTGCATCAAGTTTAATTT
TAAGTAAAGCTTTTTATATGTAGATATTTTGTTGAATTTGTAAATACACTGAAAGTGTAG
ATGCGATATGCTTATAGGTGTTACATACAAATAAACATGCCAACAATGTTTATGTTGTAC
TGTATAAGACTTTAGCTAATTAATACAGTGCAGGGAGTTGGAAAGTGTTGACTTAATTGC
CTTTAGGGTTTTTATTTTCCCTTTTTTGCTGTGAAACTGAAAGTGTGAACTATTTTCCAT
ATTGACAACAGGTTTCTAAGAGGAACTCTTCAGAGCTTTGCCTAAGCACAGTTTGAAGGA
ATCGCAGGTACAGATGGCCCTAAGTAGTTTCCAATCTCCATATTCACTTTTCTTAAATCA
ACCTTCCTAATGGAAATCCAAAAAGACACCACAGGCTTGCCTTGGCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTAAGAAGGATGGCAACCGGGTAGAAAGTTTTAAACAAACAAGTTAAAAAAAAAAAAAA
CAAGTTATTGCAAAACTAGAAGTAGACAACAGCACACCAACAGGAATATATTTTTCTCTT
AAGTCTTTACCTACGTGGCAGCTTTTGAAATTCTCGGCAGCATTAAACAGTGTGTATGCA
AATTGCTATGGATGCCTTTCAGGGTCTAAGAAATTGGACAAGTGCTAACGAGGCCAACAG
TAAAAGGAATTACATCTGCCATTTGAAAAATAAGCATATGTATTCTACCATATTCACGAA
TAATATCTATCAAATGGTTTTCTTCCAATTATGAAATTCTACGACAACCTATGGTTGAAG
GAATGCTCGGTTTCATTTGCCAATAAATTGGTTTCTCATAACTTGCATCAAGTTTAATTT
TAAGTAAAGCTTTTTATATGTAGATATTTTGTTGAATTTGTAAATACACTGAAAGTGTAG
ATGCGATATGCTTATAGGTGTTACATACAAATAAACATGCCAACAATGTTTATGTTGTAC
TGTATAAGACTTTAGCTAATTAATACAGTGCAGGGAGTTGGAAAGTGTTGACTTAATTGC
CTTTAGGGTTTTTATTTTCCCTTTTTTGCTGTGAAACTGAAAGTGTGAACTATTTTCCAT
ATTGACAACAGGTTTCTAAGAGGAACTCTTCAGAGCTTTGCCTAAGCACAGTTTGAAGGA
ATCGCAGGTACAGATGGCCCTAAGTAGTTTCCAATCTCCATATTCACTTTTCTTAAATCA
ACCTTCCTAATGGAAATCCAAAAAGACACCACAGGCTTGCCTTGGCAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               461-572, + strand, RNAz p=0.931606

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               461-572, + strand, RNAz p=0.931606

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               438-535, + strand, RNAmicro p=0.977351

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               438-535, + strand, RNAmicro p=0.977351

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_005010, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_005010, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               62-828, gnl|bosTau2|chr4 (19276496-19275737)
               

               
               62-828, gnl|Hg17|chr7 (107383157-107382349)
               

               
               62-828, gnl|Mm7|chr12 (42567704-42568534)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               62-828, gnl|bosTau2|chr4 (19276496-19275737)
               

               
               62-828, gnl|Hg17|chr7 (107383157-107382349)
               

               
               62-828, gnl|Mm7|chr12 (42567704-42568534)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               fco (1.41487)
               

               
               cbr (0.383926)
               

               
               spc (0.340097)
               

               
               fbs (0.175346)
               

               
               ret (0.128733)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (1.41487)
               

               
               cbr (0.383926)
               

               
               spc (0.340097)
               

               
               fbs (0.175346)
               

               
               ret (0.128733)

	62-828, gnl\|bosTau2\|chr4 (19276496-19275737)
	62-828, gnl\|Hg17\|chr7 (107383157-107382349)
	62-828, gnl\|Mm7\|chr12 (42567704-42568534)

	fco (1.41487)
	cbr (0.383926)
	spc (0.340097)
	fbs (0.175346)
	ret (0.128733)