Non-Coding RNA Search

Ss1.1-rpfco0114_f11.5

Sequence:


               
               TAAAAAGTTATATGTAGGGAAAAATAGACCATGAACAAAAACAAAAGACAAATGCTAGGT
TGATGTGTAAGTTAGTTCTCGGTTTGGAAAACAAATTGCTTTAACTGTTTTAAATAGGAA
GGGCTTTTATACAAGAAACGAGATGCTTACTCAACTGTGGGACTGAGGGAACAAGTCAGG
AGAAATCATTGCTGGCTCTTGAAAATCCAGTAAAGCAGGAATTTCAGGAAAGCTCCCACT
AATCTCCGCACACTCTCTACAGGCCATTTCTGCCATCAGTCAGCATGTTATGATGAAATA
AAAAACCCTTCCTCATTTCCGTGAGATTGCCTCTCACTGGTGAAAGTTAAACCAGGACCC
GTTTAATACAGGTATCTGGACAATTGAGCTTCTAGTCTTTTAGCACCTATGGAGGAGAGA
TTTAGAAAAGCAAGAATGGTGTTGACAGAGTTCCCACTGTGACACAATGGGTTAAGGATC
CCACGTTGCCATAGCTGTGGTGTAGGTTGCAGCTGCGGCTCGGATTTGATCCCTGGCCCG
GGAACTTCCATATGCTGTGGCTGTGGCTGAAAAAGAAAAAAAAAGAATAGCGCTGAGTAT
TTCTGTTCTGCTGACAGAAATAAGGGTTATTTTGTTCTTTTTGCAGGAAGATACACGTAC
ATGCCATGTAGAAATTTCACAATCGGAAATTTCAGTCTAGAAATAGATGCTTTGGAATAA
AGCCACCAATATGTAAAAATATTTGCAAAACTGGCTAACCGTTCATCCAGTTCCTGTTGG
GGCATACAGGAAGACTGCATTTCCTAGCCTCCCTTGCAGTTAGGTTGGGAGCTTGTGATT
GGGTTGTAGCCAGTGAAATCTGTGCAGAAGTGCCCCAAGCCACATCCAGTCTTTGTCATA
AATCTTTCCTTGTCTTCCAAGCTCTCTGCCATGTTGGCTGCTGGAAATGAAGGAATCTGA
GGTAGTGAAACCATAAGATGAATCCCTGAATTACGATTGGAGGCCAGCTCCTCGTGCTAG
CAGCCTGATTTTGCACCAGGCAGTGATGTGAGCTAGAAACAAACTTACTGTGGTAAGCTG
GTAAGATTTTTGGAGTGTTTAAACTTGAGCCACACAAGATATTTATATGAAGATATTTAT
TGTACCATTTCCAGTGGCAAAAAAGCAAAATAAAGGAAAGTGAATAGCAGTCAATAAAGA
AATGGTGAATAATGCCATATCTGTTATATCATACACCTGCCATTATCAATATGTATTGAC
AACAGGTATTATCCATATTGCTTTATAAGACTAAAAATGCATTCATATATATTTGAATTC
CATATATAGTGGAAAATTAAGAAGTAATGTCTACTAAGTTATAAGCATTGGTGAAGAGGA
TCAGTTAAAATTTTATTAAGTCCATTGTGCATTATAAAAAATATGTATCATGGTTTTAAA
AAATACTTGATTAAAATATTTGCTTTTAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAAAAAGTTATATGTAGGGAAAAATAGACCATGAACAAAAACAAAAGACAAATGCTAGGT
TGATGTGTAAGTTAGTTCTCGGTTTGGAAAACAAATTGCTTTAACTGTTTTAAATAGGAA
GGGCTTTTATACAAGAAACGAGATGCTTACTCAACTGTGGGACTGAGGGAACAAGTCAGG
AGAAATCATTGCTGGCTCTTGAAAATCCAGTAAAGCAGGAATTTCAGGAAAGCTCCCACT
AATCTCCGCACACTCTCTACAGGCCATTTCTGCCATCAGTCAGCATGTTATGATGAAATA
AAAAACCCTTCCTCATTTCCGTGAGATTGCCTCTCACTGGTGAAAGTTAAACCAGGACCC
GTTTAATACAGGTATCTGGACAATTGAGCTTCTAGTCTTTTAGCACCTATGGAGGAGAGA
TTTAGAAAAGCAAGAATGGTGTTGACAGAGTTCCCACTGTGACACAATGGGTTAAGGATC
CCACGTTGCCATAGCTGTGGTGTAGGTTGCAGCTGCGGCTCGGATTTGATCCCTGGCCCG
GGAACTTCCATATGCTGTGGCTGTGGCTGAAAAAGAAAAAAAAAGAATAGCGCTGAGTAT
TTCTGTTCTGCTGACAGAAATAAGGGTTATTTTGTTCTTTTTGCAGGAAGATACACGTAC
ATGCCATGTAGAAATTTCACAATCGGAAATTTCAGTCTAGAAATAGATGCTTTGGAATAA
AGCCACCAATATGTAAAAATATTTGCAAAACTGGCTAACCGTTCATCCAGTTCCTGTTGG
GGCATACAGGAAGACTGCATTTCCTAGCCTCCCTTGCAGTTAGGTTGGGAGCTTGTGATT
GGGTTGTAGCCAGTGAAATCTGTGCAGAAGTGCCCCAAGCCACATCCAGTCTTTGTCATA
AATCTTTCCTTGTCTTCCAAGCTCTCTGCCATGTTGGCTGCTGGAAATGAAGGAATCTGA
GGTAGTGAAACCATAAGATGAATCCCTGAATTACGATTGGAGGCCAGCTCCTCGTGCTAG
CAGCCTGATTTTGCACCAGGCAGTGATGTGAGCTAGAAACAAACTTACTGTGGTAAGCTG
GTAAGATTTTTGGAGTGTTTAAACTTGAGCCACACAAGATATTTATATGAAGATATTTAT
TGTACCATTTCCAGTGGCAAAAAAGCAAAATAAAGGAAAGTGAATAGCAGTCAATAAAGA
AATGGTGAATAATGCCATATCTGTTATATCATACACCTGCCATTATCAATATGTATTGAC
AACAGGTATTATCCATATTGCTTTATAAGACTAAAAATGCATTCATATATATTTGAATTC
CATATATAGTGGAAAATTAAGAAGTAATGTCTACTAAGTTATAAGCATTGGTGAAGAGGA
TCAGTTAAAATTTTATTAAGTCCATTGTGCATTATAAAAAATATGTATCATGGTTTTAAA
AAATACTTGATTAAAATATTTGCTTTTAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               3-252, gnl|bosTau2|chr12 (26952124-26952377)
               


               
               255-445, gnl|bosTau2|chr12 (26952402-26952606)
               


               
               574-1378, gnl|bosTau2|chr12 (26952585-26953441)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-252, gnl|bosTau2|chr12 (26952124-26952377)
               


               
               255-445, gnl|bosTau2|chr12 (26952402-26952606)
               


               
               574-1378, gnl|bosTau2|chr12 (26952585-26953441)

Expressed library(ies): 39 entry(ies)

More info

Expressed library(ies): 39 entry(ies)

Help | Less info


               
               gul (0.532765)
               

               
               thg (0.507164)
               

               
               aor (0.390549)
               

               
               fty (0.351679)
               

               
               fbs (0.350693)
               

               
               sin (0.349895)
               

               
               rec (0.346141)
               

               
               fco (0.314416)
               

               
               sme (0.305437)
               

               
               isp (0.300752)
               

               
               ski (0.29347)
               

               
               liv (0.292569)
               

               
               lnt (0.284616)
               

               
               csk (0.281492)
               

               
               ste (0.270416)
               

               
               lyg (0.266205)
               

               
               kid (0.259471)
               

               
               bla (0.248694)
               

               
               tra (0.246184)
               

               
               cbe (0.239234)
               

               
               spc (0.226732)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               cmu (0.186393)
               

               
               ill (0.175593)
               

               
               eye (0.170503)
               

               
               cki (0.165235)
               

               
               tbr (0.154178)
               

               
               eli (0.151814)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               ute (0.132784)
               

               
               ret (0.128733)
               

               
               med (0.116252)
               

               
               cbl (0.114797)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

Expressed library(ies): 39 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (0.532765)
               

               
               thg (0.507164)
               

               
               aor (0.390549)
               

               
               fty (0.351679)
               

               
               fbs (0.350693)
               

               
               sin (0.349895)
               

               
               rec (0.346141)
               

               
               fco (0.314416)
               

               
               sme (0.305437)
               

               
               isp (0.300752)
               

               
               ski (0.29347)
               

               
               liv (0.292569)
               

               
               lnt (0.284616)
               

               
               csk (0.281492)
               

               
               ste (0.270416)
               

               
               lyg (0.266205)
               

               
               kid (0.259471)
               

               
               bla (0.248694)
               

               
               tra (0.246184)
               

               
               cbe (0.239234)
               

               
               spc (0.226732)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               cmu (0.186393)
               

               
               ill (0.175593)
               

               
               eye (0.170503)
               

               
               cki (0.165235)
               

               
               tbr (0.154178)
               

               
               eli (0.151814)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               ute (0.132784)
               

               
               ret (0.128733)
               

               
               med (0.116252)
               

               
               cbl (0.114797)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

	3-252, gnl\|bosTau2\|chr12 (26952124-26952377)

	255-445, gnl\|bosTau2\|chr12 (26952402-26952606)

	574-1378, gnl\|bosTau2\|chr12 (26952585-26953441)

	gul (0.532765)
	thg (0.507164)
	aor (0.390549)
	fty (0.351679)
	fbs (0.350693)
	sin (0.349895)
	rec (0.346141)
	fco (0.314416)
	sme (0.305437)
	isp (0.300752)
	ski (0.29347)
	liv (0.292569)
	lnt (0.284616)
	csk (0.281492)
	ste (0.270416)
	lyg (0.266205)
	kid (0.259471)
	bla (0.248694)
	tra (0.246184)
	cbe (0.239234)
	spc (0.226732)
	fcc (0.197785)
	col (0.195008)
	cmu (0.186393)
	ill (0.175593)
	eye (0.170503)
	cki (0.165235)
	tbr (0.154178)
	eli (0.151814)
	fat (0.147427)
	lin (0.145603)
	spl (0.143184)
	hyp (0.142837)
	ute (0.132784)
	ret (0.128733)
	med (0.116252)
	cbl (0.114797)
	nbm (0.0993246)
	jej (0.0989218)