Non-Coding RNA Search

Ss1.1-rpfco0114_l16.5

Sequence:


               
               CCTTCCCCACTTCTCACCACCACCGCCTCCATTATGACATTCCTGGCTTCTGCCAGTTTG
TAGAGAGAAAGGTGGACTGGTTTTAGTGCTCTGAAGAAAAAAAAGAAAAAAAAAAAAGCT
GCAGTATTTCAGGTGCAGTATGATATTTCCTAATCTTTCCTATTTCTTAACAAAAGATTT
TAAAGTACTTATCTAGTCATTGAAGTTTTTTTTTTCCTTTACATAAATATTGATATATTC
TTTTTCTACTCAAAGTGCCAAAGGCTACAGTTTTTAATGACTTAACAAATTATACCACAT
TATTAAGGAAATATAATGATAGTCGCTAGAACTCAGACCTCTGCATGTATATTTGATAAC
ACATCTTTTGTAAAAAAAAAATTACAAAAAATATTTGTTTACATTCCACTGGTACCTTAA
TTTAAAATAAATGAGACTAACAGGTGGTATCTCTTCTTAGTGTTCTATTTATCTTATTTG
CCTATGAGAGCACTTCTTCCTTTGTTAGGCTGTGCTTTATTGATAAAACCAAGTATTGAA
TAAAGAGAGTTAATTATCTTTTTAAAGTAAATAAAATTATTAAAATATATATGATATATA
TAAAGTATTGTGATTAATAAAAATGTTATGCAATGTTTTCCAAACTGATAAAGTTTGTAA
AGTGCTATAATGTATTTTGTTAAGTACAGATCAAAGCTATTGTGTGAGTATATTGTGCTA
ACATCTTAGAAATAAAGATTAGATTTCTTCATCAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTTCCCCACTTCTCACCACCACCGCCTCCATTATGACATTCCTGGCTTCTGCCAGTTTG
TAGAGAGAAAGGTGGACTGGTTTTAGTGCTCTGAAGAAAAAAAAGAAAAAAAAAAAAGCT
GCAGTATTTCAGGTGCAGTATGATATTTCCTAATCTTTCCTATTTCTTAACAAAAGATTT
TAAAGTACTTATCTAGTCATTGAAGTTTTTTTTTTCCTTTACATAAATATTGATATATTC
TTTTTCTACTCAAAGTGCCAAAGGCTACAGTTTTTAATGACTTAACAAATTATACCACAT
TATTAAGGAAATATAATGATAGTCGCTAGAACTCAGACCTCTGCATGTATATTTGATAAC
ACATCTTTTGTAAAAAAAAAATTACAAAAAATATTTGTTTACATTCCACTGGTACCTTAA
TTTAAAATAAATGAGACTAACAGGTGGTATCTCTTCTTAGTGTTCTATTTATCTTATTTG
CCTATGAGAGCACTTCTTCCTTTGTTAGGCTGTGCTTTATTGATAAAACCAAGTATTGAA
TAAAGAGAGTTAATTATCTTTTTAAAGTAAATAAAATTATTAAAATATATATGATATATA
TAAAGTATTGTGATTAATAAAAATGTTATGCAATGTTTTCCAAACTGATAAAGTTTGTAA
AGTGCTATAATGTATTTTGTTAAGTACAGATCAAAGCTATTGTGTGAGTATATTGTGCTA
ACATCTTAGAAATAAAGATTAGATTTCTTCATCAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               1-117, - strand, RNAz p=0.755718

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-117, - strand, RNAz p=0.755718

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-757, gnl|bosTau2|chr3 (34977418-34978159)
               

               
               1-757, gnl|Hg17|chr1 (99486402-99487161)
               

               
               1-757, gnl|Mm7|chr3 (117095083-117094344)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-757, gnl|bosTau2|chr3 (34977418-34978159)
               

               
               1-757, gnl|Hg17|chr1 (99486402-99487161)
               

               
               1-757, gnl|Mm7|chr3 (117095083-117094344)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

Help | Less info


               
               fco (1.72929)
               

               
               eye (0.170503)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               pgl (0.118483)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (1.72929)
               

               
               eye (0.170503)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               pgl (0.118483)

	1-757, gnl\|bosTau2\|chr3 (34977418-34978159)
	1-757, gnl\|Hg17\|chr1 (99486402-99487161)
	1-757, gnl\|Mm7\|chr3 (117095083-117094344)

	fco (1.72929)
	eye (0.170503)
	ret (0.128733)
	sug (0.127291)
	pgl (0.118483)