Non-Coding RNA Search

Ss1.1-rpfco0115_m9.5

Sequence:


               
               ACGGGGAAAAAAAGTGAAACATGATTTTGAGCATTCTTCTCTTGAGATCAGCAAAGCAAG
GTTGAGCAACACCAAAGAGAAGTCAAAGAGTCAAATATTCTTTTAAATTCCAAATGATGC
TGGTAGAATAAGAGGAGCATAGCAGGTGGGATTTCCTTAAGGTGGACTCAAGTTAGTGAC
TTGTATGGACCACAGGTGACACGGTGTGGACTGAATAACAAGGTAAGCATCGTTAGTCAA
TTTCTCACACTCCCAACCAGTGAATTGAGGCTATTTTAGTTTCTCTCATTTCTTCTAATT
GAAAGGTCTCTAATTAGAGATCCAAAAGTCTGATCTGGTTCCTAAAACCCAATATGATTT
GACCCAATTCCTTGACACTACACATTATGTTGGCTGGATATTAGGTTGAGGTTGTGAATG
GAAATACCAGAATTGCCAATGAGTAGAGAATGTTGTGTGGCAAAGTACGAATATAACCAC
TTCTCTGTAGAAAGTTAATAATACCATTTAATACATATTCATGTTTTAAAGACTGAATGT
GCCATATTTATATCTTAGATTCAAATAAACGTTTAACCAAACATAAGAACACTACAATCA
CAACTGCAGCTATCTGTGTTTTTTAACTACTGAAAACATACTTCTTTATAAGAGCAGCAT
ACATGAAATCTTGATGTCAATATTTACTGTTGCTTAACAGACAAATTTATGTAATTATTT
TGGAAGATGTGTATTAATTTAAATGCCATTCAGAAAAATTATAGATGTCAATATAAAAAT
CATTTATGTGTGTAAATACTCAGTGGAGAAAGCCTAAAACTGAAATGTGATGTTAAATCA
CTGAAGAAACAGTAATATTTTAAATGAAATTCCATTTATGAATGTATCACTATTAGACTC
TAAAGTTATGTCTTTTCATGATGTCTAAATACAAAGCTCATTAAATTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACGGGGAAAAAAAGTGAAACATGATTTTGAGCATTCTTCTCTTGAGATCAGCAAAGCAAG
GTTGAGCAACACCAAAGAGAAGTCAAAGAGTCAAATATTCTTTTAAATTCCAAATGATGC
TGGTAGAATAAGAGGAGCATAGCAGGTGGGATTTCCTTAAGGTGGACTCAAGTTAGTGAC
TTGTATGGACCACAGGTGACACGGTGTGGACTGAATAACAAGGTAAGCATCGTTAGTCAA
TTTCTCACACTCCCAACCAGTGAATTGAGGCTATTTTAGTTTCTCTCATTTCTTCTAATT
GAAAGGTCTCTAATTAGAGATCCAAAAGTCTGATCTGGTTCCTAAAACCCAATATGATTT
GACCCAATTCCTTGACACTACACATTATGTTGGCTGGATATTAGGTTGAGGTTGTGAATG
GAAATACCAGAATTGCCAATGAGTAGAGAATGTTGTGTGGCAAAGTACGAATATAACCAC
TTCTCTGTAGAAAGTTAATAATACCATTTAATACATATTCATGTTTTAAAGACTGAATGT
GCCATATTTATATCTTAGATTCAAATAAACGTTTAACCAAACATAAGAACACTACAATCA
CAACTGCAGCTATCTGTGTTTTTTAACTACTGAAAACATACTTCTTTATAAGAGCAGCAT
ACATGAAATCTTGATGTCAATATTTACTGTTGCTTAACAGACAAATTTATGTAATTATTT
TGGAAGATGTGTATTAATTTAAATGCCATTCAGAAAAATTATAGATGTCAATATAAAAAT
CATTTATGTGTGTAAATACTCAGTGGAGAAAGCCTAAAACTGAAATGTGATGTTAAATCA
CTGAAGAAACAGTAATATTTTAAATGAAATTCCATTTATGAATGTATCACTATTAGACTC
TAAAGTTATGTCTTTTCATGATGTCTAAATACAAAGCTCATTAAATTG

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               11-239, gnl|bosTau2|chr6 (15613666-15613898)
               

               
               11-239, gnl|Hg17|chr4 (90518773-90518504)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-239, gnl|bosTau2|chr6 (15613666-15613898)
               

               
               11-239, gnl|Hg17|chr4 (90518773-90518504)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               spl (0.286369)
               

               
               fco (0.157208)
               

               
               liv (0.146284)
               

               
               lnt (0.142308)
               

               
               ret (0.128733)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.286369)
               

               
               fco (0.157208)
               

               
               liv (0.146284)
               

               
               lnt (0.142308)
               

               
               ret (0.128733)

	11-239, gnl\|bosTau2\|chr6 (15613666-15613898)
	11-239, gnl\|Hg17\|chr4 (90518773-90518504)

	spl (0.286369)
	fco (0.157208)
	liv (0.146284)
	lnt (0.142308)
	ret (0.128733)