Non-Coding RNA Search

Ss1.1-rpfco0117_p8.5

Sequence:


               
               CACCGGAGCGGAGCTGCGACATTGGTCAGATATGCTGGCCAACCCCAGGCGACCCATCGC
CCAGTGGCACACCCTACAGGTGGAGGAGGAAGTTGATGCCATGCTGGCTGTCAAGAAGTA
AAGGAGAGAAGCCTTTCTGCATTTGCCCACATAGTGCTCTTTAGCCAGTATCTGTAAATA
CCTCAGTAATATGGGTCCTTTCATTTTTCCAGCCATGCGTTCCTAACACAATTCAGTGGT
ACTTCAAATCCTGTTTTAATTTGCACAAATTTAAACGTAGAGAGCCCATAAGCCCTTCAT
CCTACCACTGCCCTCCGAATCTACTCTTATTTTAAGCAATATGATGTGTAGATAGAGCAT
GACGGAAATTATTTATTGTATCACACCGTTGTATATACCAGTATGCTAAAGATTTATTTC
TAGTTTGTGTATTTGTATGTTGTAAGCGTTTCCTAATCTGTGTATATCTAGATGTTTTTA
ATAAGATGTTCTATTTTAAACTATGTAAATGGACTGAGATATAGGAGAGCTGATAATATA
TTATATGGTAAATATAGTATCGTCTGCATTCCAGCAAAAATATCAACTTGTAAGGCACTA
GTACAATGAAACTGACATCTTAAAGGACAACTTAAACCTGAGCTTTCTATTGACTCATTT
GAGCACCAAGATACACTGACACCACATATTTGGTGGGTGAATCCAATTTTACAGAATTCT
TCAGGCAAATGAGCATGATCTGAGCAGCATCAAGCCTGACCTCCTGGAAGCATAGCCACA
AACCAGAATAGCATCAGTCTGTGTGTATCTACAGAGCTAAAACCAGTGCTTCACTTTTAC
ATTTGAGGAAGCAGCTGGACAGGAGTCAACGATTTCATATTACTGCCTAGAGAGCAGTGA
CGCGATGCTGTTCCGTGTGTGTATGTGCGCGTGCATGCACGTGCATTTGTTTGGGGATGG
GGTGGGTGGGAGGAAGCTGAGTGGAAAAGAAGTCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACCGGAGCGGAGCTGCGACATTGGTCAGATATGCTGGCCAACCCCAGGCGACCCATCGC
CCAGTGGCACACCCTACAGGTGGAGGAGGAAGTTGATGCCATGCTGGCTGTCAAGAAGTA
AAGGAGAGAAGCCTTTCTGCATTTGCCCACATAGTGCTCTTTAGCCAGTATCTGTAAATA
CCTCAGTAATATGGGTCCTTTCATTTTTCCAGCCATGCGTTCCTAACACAATTCAGTGGT
ACTTCAAATCCTGTTTTAATTTGCACAAATTTAAACGTAGAGAGCCCATAAGCCCTTCAT
CCTACCACTGCCCTCCGAATCTACTCTTATTTTAAGCAATATGATGTGTAGATAGAGCAT
GACGGAAATTATTTATTGTATCACACCGTTGTATATACCAGTATGCTAAAGATTTATTTC
TAGTTTGTGTATTTGTATGTTGTAAGCGTTTCCTAATCTGTGTATATCTAGATGTTTTTA
ATAAGATGTTCTATTTTAAACTATGTAAATGGACTGAGATATAGGAGAGCTGATAATATA
TTATATGGTAAATATAGTATCGTCTGCATTCCAGCAAAAATATCAACTTGTAAGGCACTA
GTACAATGAAACTGACATCTTAAAGGACAACTTAAACCTGAGCTTTCTATTGACTCATTT
GAGCACCAAGATACACTGACACCACATATTTGGTGGGTGAATCCAATTTTACAGAATTCT
TCAGGCAAATGAGCATGATCTGAGCAGCATCAAGCCTGACCTCCTGGAAGCATAGCCACA
AACCAGAATAGCATCAGTCTGTGTGTATCTACAGAGCTAAAACCAGTGCTTCACTTTTAC
ATTTGAGGAAGCAGCTGGACAGGAGTCAACGATTTCATATTACTGCCTAGAGAGCAGTGA
CGCGATGCTGTTCCGTGTGTGTATGTGCGCGTGCATGCACGTGCATTTGTTTGGGGATGG
GGTGGGTGGGAGGAAGCTGAGTGGAAAAGAAGTCAG

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-989, gnl|bosTau2|chr5 (5203037-5204039)
               

               
               1-989, gnl|Hg17|chr12 (78345252-78346249)
               

               
               1-989, gnl|Mm7|chr10 (107962715-107961696)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-989, gnl|bosTau2|chr5 (5203037-5204039)
               

               
               1-989, gnl|Hg17|chr12 (78345252-78346249)
               

               
               1-989, gnl|Mm7|chr10 (107962715-107961696)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

Help | Less info


               
               fco (0.471624)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               ecc (0.115035)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.471624)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               ecc (0.115035)

	1-989, gnl\|bosTau2\|chr5 (5203037-5204039)
	1-989, gnl\|Hg17\|chr12 (78345252-78346249)
	1-989, gnl\|Mm7\|chr10 (107962715-107961696)