Non-Coding RNA Search

Ss1.1-rpfco0118_p20.5

Sequence:


               
               GGGGCCGTGGCGCTGAATATATTCATTGTTTGCAACCTGCCACTGGACGTTGGAGAATGC
TTCTTATAGTGGTATCTGTCTGTACAGCTACTGGTGCCTGGAACTGGTTAATAGATCCCG
AGACGCAAAAGGTGTCTTTCTTCACATCGTTATGGAATCATCCATTTTTCACGATTAGCT
GTATCACTCTAATAGGCTTGTTCTTTGCTGGAATACACAAGAGAGTAGTTGCACCGTCAA
TTATAGCTGCTCGATGTCGAACTGTATTAGCAGAGTACAATATGTCTTGTGATGATACAG
GAAAACTAATTTTGAAACCTAGGCCTCATGTTCAATGACAATCCGCATTCATTGTTCTGG
GACTTAAAACAACCTTCCTTGGGATGAGTGATACAGCAGAAAGCCATAAAGGATTCCTTT
TGCAGTTGGATATGTGAAGGTCATAGCAACAATGGACAAGAAGTGTGCAATATTCCCCAG
AACATCTTCCTGATGATGACTCACGCTATCAGTACTTTGGTACTTTTGATTATCTGTGTT
TCAGTATTAGTGTCACTTTAGTACTTCAGGTCCTGCAAGGAGTTTTGCAGATGAAGTATG
TATGTATGTTACTAAGTTAAACTTAGAAACAGAACCTCATCCAGTTTTTATAATGTATTT
TTGCAAACTACTGTAAATAGCAAATCAATGCCAATGTTAAGGAGGAAATGTTATGTGGAC
TTTGTTCTGCACCAGTATTTCAGGAACATCTGCTTGCCGTCTCCACAGCTCTTTAAAACC
GGCTATTATGTATAGCTGTGCCTTTCACTCTTTTAATCATAGTGCAGGAAAAGCACCAGA
TTGAGCTTAGACTGAGGAAGACTCATCTCCATTATGTTGTAAGAAATTGTAGCTGTTTTG
AGAAATAGTTTTTGTTAAACCAGAATAGTGAACTTCAGCCACTACAGTGATACTTTCCAG
TTTGCTGTTTTCACTTAATATATGCTTATTAATATATACTTTCATTTAATATACTTGATA
TTTTTTTAATGATTTTAAGAACACTCCAGAGGCTTCTGAATAGACAAGTTTAGTTCCAAA
TTATGTATTATCTGGGAATGTGATCGTCATTGTTTTAGATAATTGGATTTTATGCTGCGG
TAGGCGTGCTGTTGCAGTAGTATTGTGCAGGTGTGATTGATCATTCACTCCATCACAAGG
ATAACTTGGGAGCAGTGCCACAAACCAGTCTTCAATTCTCACTGTTTAGAGAGTGTTAAT
GACATACTGTGTATGCATATTAGCCACATAGACTATAATAACCCTTAAAATTAAACTATT
GGAATTGCTGTAAATATTTTAAAGAACTGGAGGTGCCTTTTACCTGTTTATTAGAAGATT
TTGAAAAGGTTTAAATTATTTCATGAGCAGTCTTTTACATTTCATTTAACGAAAGCTAAA
AATTCAAAGACAAGACAAAAACTTTTTAATAAGACTACATTTAAATGTGTTCATCTTGGC
TTTCACGTGTATAAAATTTCATCCTTGGAACTGCAGCAATAAAACCCTCTGCTCCTACGA
AGTCTTAAGAGGGTATGATGTATATTCTGCATTGTTTTATTTTCTGTAAATTTTGTAGGT
AAATATGTGCATAAAAATAAATACTTTATATATAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGCCGTGGCGCTGAATATATTCATTGTTTGCAACCTGCCACTGGACGTTGGAGAATGC
TTCTTATAGTGGTATCTGTCTGTACAGCTACTGGTGCCTGGAACTGGTTAATAGATCCCG
AGACGCAAAAGGTGTCTTTCTTCACATCGTTATGGAATCATCCATTTTTCACGATTAGCT
GTATCACTCTAATAGGCTTGTTCTTTGCTGGAATACACAAGAGAGTAGTTGCACCGTCAA
TTATAGCTGCTCGATGTCGAACTGTATTAGCAGAGTACAATATGTCTTGTGATGATACAG
GAAAACTAATTTTGAAACCTAGGCCTCATGTTCAATGACAATCCGCATTCATTGTTCTGG
GACTTAAAACAACCTTCCTTGGGATGAGTGATACAGCAGAAAGCCATAAAGGATTCCTTT
TGCAGTTGGATATGTGAAGGTCATAGCAACAATGGACAAGAAGTGTGCAATATTCCCCAG
AACATCTTCCTGATGATGACTCACGCTATCAGTACTTTGGTACTTTTGATTATCTGTGTT
TCAGTATTAGTGTCACTTTAGTACTTCAGGTCCTGCAAGGAGTTTTGCAGATGAAGTATG
TATGTATGTTACTAAGTTAAACTTAGAAACAGAACCTCATCCAGTTTTTATAATGTATTT
TTGCAAACTACTGTAAATAGCAAATCAATGCCAATGTTAAGGAGGAAATGTTATGTGGAC
TTTGTTCTGCACCAGTATTTCAGGAACATCTGCTTGCCGTCTCCACAGCTCTTTAAAACC
GGCTATTATGTATAGCTGTGCCTTTCACTCTTTTAATCATAGTGCAGGAAAAGCACCAGA
TTGAGCTTAGACTGAGGAAGACTCATCTCCATTATGTTGTAAGAAATTGTAGCTGTTTTG
AGAAATAGTTTTTGTTAAACCAGAATAGTGAACTTCAGCCACTACAGTGATACTTTCCAG
TTTGCTGTTTTCACTTAATATATGCTTATTAATATATACTTTCATTTAATATACTTGATA
TTTTTTTAATGATTTTAAGAACACTCCAGAGGCTTCTGAATAGACAAGTTTAGTTCCAAA
TTATGTATTATCTGGGAATGTGATCGTCATTGTTTTAGATAATTGGATTTTATGCTGCGG
TAGGCGTGCTGTTGCAGTAGTATTGTGCAGGTGTGATTGATCATTCACTCCATCACAAGG
ATAACTTGGGAGCAGTGCCACAAACCAGTCTTCAATTCTCACTGTTTAGAGAGTGTTAAT
GACATACTGTGTATGCATATTAGCCACATAGACTATAATAACCCTTAAAATTAAACTATT
GGAATTGCTGTAAATATTTTAAAGAACTGGAGGTGCCTTTTACCTGTTTATTAGAAGATT
TTGAAAAGGTTTAAATTATTTCATGAGCAGTCTTTTACATTTCATTTAACGAAAGCTAAA
AATTCAAAGACAAGACAAAAACTTTTTAATAAGACTACATTTAAATGTGTTCATCTTGGC
TTTCACGTGTATAAAATTTCATCCTTGGAACTGCAGCAATAAAACCCTCTGCTCCTACGA
AGTCTTAAGAGGGTATGATGTATATTCTGCATTGTTTTATTTTCTGTAAATTTTGTAGGT
AAATATGTGCATAAAAATAAATACTTTATATATAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|47208349|emb|CAF90827.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47208349|emb|CAF90827.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               495-651, + strand, RNAz p=0.903115

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               495-651, + strand, RNAz p=0.903115

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_153261, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_153261, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               130-241, gnl|bosTau2|chr18 (20203295-20203184)
               

               
               130-241, gnl|Hg17|chr16 (48624807-48624918)
               

               
               130-241, gnl|Mm7|chr8 (86721992-86722103)
               


               
               297-1654, gnl|bosTau2|chr18 (20139544-20140900)
               

               
               297-1654, gnl|Hg17|chr16 (48626829-48628492)
               

               
               297-1654, gnl|Mm7|chr8 (86726087-86727408)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               130-241, gnl|bosTau2|chr18 (20203295-20203184)
               

               
               130-241, gnl|Hg17|chr16 (48624807-48624918)
               

               
               130-241, gnl|Mm7|chr8 (86721992-86722103)
               


               
               297-1654, gnl|bosTau2|chr18 (20139544-20140900)
               

               
               297-1654, gnl|Hg17|chr16 (48626829-48628492)
               

               
               297-1654, gnl|Mm7|chr8 (86726087-86727408)

Expressed library(ies): 21 entry(ies)

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Expressed library(ies): 21 entry(ies)

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               amn (0.417711)
               

               
               elu (0.385356)
               

               
               gul (0.355177)
               

               
               vin (0.332557)
               

               
               kid (0.259471)
               

               
               cbe (0.239234)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               cki (0.165235)
               

               
               fco (0.157208)
               

               
               bfe (0.149858)
               

               
               ste (0.135208)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               jca (0.11396)

Expressed library(ies): 21 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               elu (0.385356)
               

               
               gul (0.355177)
               

               
               vin (0.332557)
               

               
               kid (0.259471)
               

               
               cbe (0.239234)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               cki (0.165235)
               

               
               fco (0.157208)
               

               
               bfe (0.149858)
               

               
               ste (0.135208)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               jca (0.11396)

	130-241, gnl\|bosTau2\|chr18 (20203295-20203184)
	130-241, gnl\|Hg17\|chr16 (48624807-48624918)
	130-241, gnl\|Mm7\|chr8 (86721992-86722103)

	297-1654, gnl\|bosTau2\|chr18 (20139544-20140900)
	297-1654, gnl\|Hg17\|chr16 (48626829-48628492)
	297-1654, gnl\|Mm7\|chr8 (86726087-86727408)

	amn (0.417711)
	elu (0.385356)
	gul (0.355177)
	vin (0.332557)
	kid (0.259471)
	cbe (0.239234)
	tes (0.207814)
	hea (0.204499)
	aor (0.195274)
	col (0.195008)
	nlu (0.191681)
	cki (0.165235)
	fco (0.157208)
	bfe (0.149858)
	ste (0.135208)
	sug (0.127291)
	tra (0.123092)
	eep (0.122564)
	cly (0.120642)
	eru (0.120048)
	jca (0.11396)