Non-Coding RNA Search

Ss1.1-rpfco0119_i24.5

Sequence:


               
               AACTTGCAGAAGTTAATAAGCAAAGAAGCACCATTCCTGGCTCAAATGCTCATCAAGCTC
AGCACTCTCTATGGGCCAAAGAAGGCACAGATATCTAGGATATGGCCAATGTGGGCTGCA
TTACCCAGTAGTTCTTCCCTTTACCCAGACCCTCTGGGCCCCAGCTTCATTAACAGTTAT
AAGGGTTAGGATGAGATGGACCACAGACTCCTTTAGTCATCCGAAAATACCCCAAATTAA
GTCCTGATGTGGGCCACTTTCAGACACAGTAGATGCTCAAAAAATTTACAAATTCAGGGA
AGACCTTTATGAAGGCCAAAACAAAATGCAGTTACTCCTTAACCTGTTTTGGTAATGCCT
ATCACATCCCAAAGATTTTCTTGCAAGGTAATCTGAAAATCATACCCCATTTTAAATTAT
GCTTCCTTAATGGGAAAATTTCAAAGAATATGAATCACTGTTGTCTTTGTCTTTGGAACT
GTGGAAGTATAAATGTACTGAAGTATACTTAAATTTATATTTGTTAATATCTTTTTAATA
CTGATATCCTGAGCATGTGACTGTTGTGGTATTGATGGAGTAGGATTTGTGGTACTTTTC
TAGCTCTGTATGCCCATAAATCAATCTTTATTAAAAGTAGTATAACTCAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACTTGCAGAAGTTAATAAGCAAAGAAGCACCATTCCTGGCTCAAATGCTCATCAAGCTC
AGCACTCTCTATGGGCCAAAGAAGGCACAGATATCTAGGATATGGCCAATGTGGGCTGCA
TTACCCAGTAGTTCTTCCCTTTACCCAGACCCTCTGGGCCCCAGCTTCATTAACAGTTAT
AAGGGTTAGGATGAGATGGACCACAGACTCCTTTAGTCATCCGAAAATACCCCAAATTAA
GTCCTGATGTGGGCCACTTTCAGACACAGTAGATGCTCAAAAAATTTACAAATTCAGGGA
AGACCTTTATGAAGGCCAAAACAAAATGCAGTTACTCCTTAACCTGTTTTGGTAATGCCT
ATCACATCCCAAAGATTTTCTTGCAAGGTAATCTGAAAATCATACCCCATTTTAAATTAT
GCTTCCTTAATGGGAAAATTTCAAAGAATATGAATCACTGTTGTCTTTGTCTTTGGAACT
GTGGAAGTATAAATGTACTGAAGTATACTTAAATTTATATTTGTTAATATCTTTTTAATA
CTGATATCCTGAGCATGTGACTGTTGTGGTATTGATGGAGTAGGATTTGTGGTACTTTTC
TAGCTCTGTATGCCCATAAATCAATCTTTATTAAAAGTAGTATAACTCAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               396-492, + strand, RNAz p=0.999335

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               396-492, + strand, RNAz p=0.999335

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               6-646, gnl|bosTau2|chr28 (10271355-10270719)
               

               
               6-646, gnl|Hg17|chr10 (60682946-60683625)
               

               
               6-646, gnl|Mm7|chr10 (70155080-70154464)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-646, gnl|bosTau2|chr28 (10271355-10270719)
               

               
               6-646, gnl|Hg17|chr10 (60682946-60683625)
               

               
               6-646, gnl|Mm7|chr10 (70155080-70154464)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               fce (0.271592)
               

               
               fhi (0.169578)
               

               
               fco (0.157208)
               

               
               ret (0.128733)
               

               
               spc (0.113366)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               fhi (0.169578)
               

               
               fco (0.157208)
               

               
               ret (0.128733)
               

               
               spc (0.113366)

	6-646, gnl\|bosTau2\|chr28 (10271355-10270719)
	6-646, gnl\|Hg17\|chr10 (60682946-60683625)
	6-646, gnl\|Mm7\|chr10 (70155080-70154464)

	fce (0.271592)
	fhi (0.169578)
	fco (0.157208)
	ret (0.128733)
	spc (0.113366)